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3  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RPOD_SULSO (P95989)

Summary

This is the summary of UniProt entry RPOD_SULSO (P95989).

Description: DNA-directed RNA polymerase subunit D EC=2.7.7.6
Source organism: Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (NCBI taxonomy ID 273057)
View Pfam proteome data.
Length: 265 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A RNA_pol_L 13 254
Pfam A RNA_pol_A_bac 44 157
low_complexity n/a 254 265

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P95989. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MSINLLHKDD TRIDLVFEGY PLEFVNAIRR ASMLYVPIMA VDDVYFIENN
50
51
SPLYDEILAH RLALIPFMSE EALDTYRWPE ECIECTENCE KCYTKIYIEA
100
101
EAPNEPRMIY SKDIKSEDPS VVPISGDIPI VLLGTNQKIS LEARLRLGYG
150
151
KEHAKFIPVS LSVVRYYPKV EILANCEKAV NVCPEGVFEL KDGKLSVKNE
200
201
LSCTLCEECL RYCNGSIRIS FVEDKYILEI ESVGSLKPER ILLEAGKSII
250
251
RKIEELEKKL VEVVK                                      
265
 

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Checksums:
CRC64:C5B9B863A78250AA
MD5:d5b128fedca14aab32f45e5baf2b35c7

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
RNA_pol_A_bac 44 - 157 2PA8 D 44 - 157 Jmol AstexViewer SPICE
2PMZ D 44 - 157 Jmol AstexViewer SPICE
S 44 - 157 Jmol AstexViewer SPICE
3HKZ D 44 - 157 Jmol AstexViewer SPICE
O 44 - 157 Jmol AstexViewer SPICE
RNA_pol_L 13 - 254 2PA8 D 13 - 254 Jmol AstexViewer SPICE
2PMZ D 13 - 254 Jmol AstexViewer SPICE
S 13 - 254 Jmol AstexViewer SPICE
3HKZ D 13 - 254 Jmol AstexViewer SPICE
O 13 - 254 Jmol AstexViewer SPICE