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4  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: COX1B_PARDE (P98002)

Summary

This is the summary of UniProt entry COX1B_PARDE (P98002).

Description: Cytochrome c oxidase subunit 1-beta EC=1.9.3.1
Source organism: Paracoccus denitrificans (NCBI taxonomy ID 266)
Length: 558 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
low_complexity n/a 2 14
Pfam A COX1 28 496
transmembrane n/a 31 53
transmembrane n/a 91 115
transmembrane n/a 135 154
transmembrane n/a 181 207
transmembrane n/a 219 246
transmembrane n/a 266 290
transmembrane n/a 302 326
transmembrane n/a 338 361
transmembrane n/a 373 392
low_complexity n/a 377 393
transmembrane n/a 412 432
transmembrane n/a 444 465
transmembrane n/a 491 512

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P98002. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MADAAVHGHG DHHDTRGFFT RWFMSTNHKD IGILYLFTAG IVGLISVCFT
50
51
VYMRMELQHP GVQYMCLEGA RLIADASAEC TPNGHLWNVM ITYHGVLMMF
100
101
FVVIPALFGG FGNYFMPLHI GAPDMAFPRL NNLSYWMYVC GVALGVASLL
150
151
APGGNDQMGS GVGWVLYPPL STTEAGYSMD LAIFAVHVSG ASSILGAINI
200
201
ITTFLNMRAP GMTLFKVPLF AWSVFITAWL ILLSLPVLAG AITMLLMDRN
250
251
FGTQFFDPAG GGDPVLYQHI LWFFGHPEVY IIILPGFGII SHVISTFAKK
300
301
PIFGYLPMVL AMAAIGILGF VVWAHHMYTA GMSLTQQAYF MLATMTIAVP
350
351
TGIKVFSWIA TMWGGSIEFK TPMLWAFGFL FLFTVGGVTG VVLSQAPLDR
400
401
VYHDTYYVVA HFHYVMSLGA VFGIFAGVYY WIGKMSGRQY PEWAGQLHFW
450
451
MMFIGSNLIF FPQHFLGRQG MPRRYIDYPV EFAYWNNISS IGAYISFASF
500
501
LFFIGIVFYT LFAGKRVNVP NYWNEHADTL EWTLPSPPPE HTFETLPKRE
550
551
DWDRAHAH                                              
558
 

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Checksums:
CRC64:A8402453C0C0339E
MD5:eb8336352a45ad1c21b01be818e955f4

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
COX1 28 - 496 1AR1 A 28 - 496 Jmol AstexViewer SPICE
1QLE A 28 - 496 Jmol AstexViewer SPICE
3EHB A 28 - 496 Jmol AstexViewer SPICE
3HB3 A 28 - 496 Jmol AstexViewer SPICE