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1  structure 1  species 0  interactions 1  sequence 1  architecture

Protein: COX13_THET8 (P98005)

Summary

This is the summary of UniProt entry COX13_THET8 (P98005).

Description: Cytochrome c oxidase polypeptide I+III EC=1.9.3.1
Source organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (NCBI taxonomy ID 300852)
View Pfam proteome data.
Length: 791 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A COX1 24 473
transmembrane n/a 28 49
low_complexity n/a 32 42
transmembrane n/a 69 99
transmembrane n/a 111 130
transmembrane n/a 155 181
transmembrane n/a 193 221
low_complexity n/a 209 221
transmembrane n/a 253 271
transmembrane n/a 283 302
transmembrane n/a 308 327
transmembrane n/a 347 369
transmembrane n/a 389 406
transmembrane n/a 418 444
transmembrane n/a 464 485
Pfam A COX3 547 791
transmembrane n/a 556 574
low_complexity n/a 562 578
transmembrane n/a 580 598
transmembrane n/a 618 641
transmembrane n/a 656 677
low_complexity n/a 657 667
transmembrane n/a 689 709
transmembrane n/a 729 752
low_complexity n/a 732 749
transmembrane n/a 773 790

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P98005. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MAITAKPKAG VWAVLWDLLT TVDHKKIGLM YTATAFFAFA LAGVFSLLIR
50
51
TQLAVPNNQF LTGEQYNQIL TLHGATMLFF FIIQAGLTGF GNFVVPLMLG
100
101
ARDVALPRVN AFSYWAFLGA IVLALMSYFF PGGAPSVGWT FYYPFSAQSE
150
151
SGVDFYLAAI LLLGFSSLLG NANFVATIYN LRAQGMSLWK MPIYVWSVFA
200
201
ASVLNLFSLA GLTAATLLVL LERKIGLSWF NPAVGGDPVL FQQFFWFYSH
250
251
PTVYVMLLPY LGILAEVAST FARKPLFGYR QMVWAQMGIV VLGTMVWAHH
300
301
MFTVGESTLF QIAFAFFTAL IAVPTGVKLF NIIGTLWGGK LQMKTPLYWV
350
351
LGFIFNFLLG GITGVMLSMT PLDYQFHDSY FVVAHFHNVL MAGSGFGAFA
400
401
GLYYWWPKMT GRMYDERLGR LHFWLFLVGY LLTFLPQYAL GYLGMPRRYY
450
451
TYNADIAGWP ELNLLSTIGA YILGLGGLVW IYTMWKSLRS GPKAPDNPWG
500
501
GYTLEWLTAS PPKAHNFDVK LPTEFPSERP LYDWKKKGVE LKPEDPAHIH
550
551
LPNSSFWPFY SAATLFAFFV AVAALPVPNV WMWVFLALFA YGLVRWALED
600
601
EYSHPVEHHT VTGKSNAWMG MAWFIVSEVG LFAILIAGYL YLRLSGAATP
650
651
PEERPALWLA LLNTFLLVSS SFTVHFAHHD LRRGRFNPFR FGLLVTIILG
700
701
VLFFLVQSWE FYQFYHHSSW QENLWTAAFF TIVGLHGLHV VIGGFGLILA
750
751
YLQALRGKIT LHNHGTLEAA SMYWHLVDAV WLVIVTIFYV W         
791
 

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Checksums:
CRC64:F4DCF3E8AFF07606
MD5:50b21000745eebca0566d86993466e50

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
COX1 24 - 473 2YEV A 24 - 473 Jmol AstexViewer SPICE
D 24 - 473 Jmol AstexViewer SPICE
COX3 547 - 791 2YEV A 547 - 791 Jmol AstexViewer SPICE
D 547 - 791 Jmol AstexViewer SPICE