Summary
This is the summary of UniProt entry PHNL_DESVM (P21852).
| Description: | Periplasmic [NiFe] hydrogenase large subunit EC=1.12.2.1 |
| Source organism: |
Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637)
(NCBI taxonomy ID
883)
View Pfam proteome data. |
| Length: | 567 amino acids |
Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.
Pfam domains
| Source | Domain | Start | End |
|---|---|---|---|
| disorder | n/a | 7 | 9 |
| Pfam B | Pfam-B_19006 | 27 | 56 |
| Pfam A | NiFeSe_Hases | 59 | 552 |
| low_complexity | n/a | 141 | 154 |
| disorder | n/a | 355 | 358 |
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Sequence annotations
This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...
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Sequence information
This is the amino acid sequence of the UniProt sequence database entry with the accession P21852. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.
| Sequence: | 1
MSGCRAQNAP GGIPVTPKSS YSGPIVVDPV TRIEGHLRIE VEVENGKVKN
50 51
AYSSSTLFRG LEIILKGRDP RDAQHFTQRT CGVCTYTHAL ASTRCVDNAV
100 101
GVHIPKNATY IRNLVLGAQY LHDHIVHFYH LHALDFVDVT AALKADPAKA
150 151
AKVASSISPR KTTAADLKAV QDKLKTFVES GQLGPFTNAY FLGGHPAYYL
200 201
DPETNLIATA HYLEALRLQV KAARAMAVFG AKNPHTQFTV VGGVTCYDAL
250 251
TPQRIAEFEA LWKETKAFVD EVYIPDLLVV AAAYKDWTQY GGTDNFITFG
300 301
EFPKDEYDLN SRFFKPGVVF KRDFKNIKPF DKMQIEEHVR HSWYEGAEAR
350 351
HPWKGQTQPK YTDLHGDDRY SWMKAPRYMG EPMETGPLAQ VLIAYSQGHP
400 401
KVKAVTDAVL AKLGVGPEAL FSTLGRTAAR GIETAVIAEY VGVMLQEYKD
450 451
NIAKGDNVIC APWEMPKQAE GVGFVNAPRG GLSHWIRIED GKIGNFQLVV
500 501
PSTWTLGPRC DKNKLSPVEA SLIGTPVADA KRPVEILRTV HSFDPCIACG
550 551
VHVIDGHTNE VHKFRIL
567
Show the unformatted sequence. |
| Checksums: |
CRC64:8BE92277C0E46FDA
MD5:f336b32dff4084c587b7c2e3febb89c2
|
Structures
For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.
| Pfam family | UniProt residues | PDB ID | PDB chain ID | PDB residues | View |
|---|---|---|---|---|---|
| NiFeSe_Hases | 59 - 552 | 1H2A | L | 59 - 552 | Jmol AstexViewer SPICE |
| 1H2R | L | 59 - 552 | Jmol AstexViewer SPICE | ||
| 1UBH | L | 59 - 552 | Jmol AstexViewer SPICE | ||
| 1UBJ | L | 59 - 552 | Jmol AstexViewer SPICE | ||
| 1UBK | L | 59 - 552 | Jmol AstexViewer SPICE | ||
| 1UBL | L | 59 - 552 | Jmol AstexViewer SPICE | ||
| 1UBM | L | 59 - 552 | Jmol AstexViewer SPICE | ||
| 1UBO | L | 59 - 552 | Jmol AstexViewer SPICE | ||
| 1UBR | L | 59 - 552 | Jmol AstexViewer SPICE | ||
| 1UBT | L | 59 - 552 | Jmol AstexViewer SPICE | ||
| 1UBU | L | 59 - 552 | Jmol AstexViewer SPICE | ||
| 1WUH | L | 59 - 552 | Jmol AstexViewer SPICE | ||
| 1WUI | L | 59 - 552 | Jmol AstexViewer SPICE | ||
| 1WUJ | L | 59 - 552 | Jmol AstexViewer SPICE | ||
| 1WUK | L | 59 - 552 | Jmol AstexViewer SPICE | ||
| 1WUL | L | 59 - 552 | Jmol AstexViewer SPICE |