Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
2  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: Q0JJA0_ORYSJ (Q0JJA0)

Summary

This is the summary of UniProt entry Q0JJA0_ORYSJ (Q0JJA0).

Description: 60S ribosomal protein L18a
Source organism: Oryza sativa subsp. japonica (Rice) (NCBI taxonomy ID 39947)
View Pfam proteome data.
Length: 178 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A Ribosomal_L18ae 6 129

Show or hide domain scores.

Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

Note: it can take a few seconds for this image to be generated and loaded.

Loading feature alignment...

Show sources update panel.

Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q0JJA0. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MGAFRFHQYQ VVGRGLPTPT DEHPKIYRMK LWATNEVRAK SKFWYFLRKL
50
51
KKVKKSNGQI LAINEIFEKN PTTIKNYGIW LRYQSRTGYH NMYKEYRDTT
100
101
LNGAVEQMYT EMASRHRVRF PCIQIIKTAT VHFKLCKRDN TKQFHKSDIK
150
151
FPLVYRKVRP PTRKLKTTFK ASRPNLFM                        
178
 

Show the unformatted sequence.

Checksums:
CRC64:1A508A4670C8D93B
MD5:6b9da06ef0dffce63663627cfcc6e9b4

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Ribosomal_L18ae 6 - 129 3IZR S 6 - 129 Jmol AstexViewer SPICE
3IZS S 6 - 129 Jmol AstexViewer SPICE

TreeFam

Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.