Summary
This is the summary of UniProt entry Q2P8P8_XANOM (Q2P8P8).
| Description: | D-alanine--D-alanine ligase 1 EC=6.3.2.4 |
| Source organism: |
Xanthomonas oryzae pv. oryzae (strain MAFF 311018)
(NCBI taxonomy ID
342109)
View Pfam proteome data. |
| Length: | 367 amino acids |
Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.
Pfam domains
| Source | Domain | Start | End |
|---|---|---|---|
| Pfam A | Dala_Dala_lig_N | 4 | 130 |
| low_complexity | n/a | 80 | 94 |
| Pfam A | Dala_Dala_lig_C | 147 | 348 |
| low_complexity | n/a | 201 | 213 |
| low_complexity | n/a | 272 | 292 |
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Sequence annotations
This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...
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Sequence information
This is the amino acid sequence of the UniProt sequence database entry with the accession Q2P8P8. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.
| Sequence: | 1
MRKIRVGLIF GGKSAEHEVS LQSARNILDA LDPQRFEPVL IGIDKQGQWH
50 51
VNDPDSFLLH ADDPARIALH RSGRGVALLP GAQQQQLRPI QPEQALAQID
100 101
VVFPIVHGTL GEDGSLQGLL RMANLPFVGS GVLGSAVAMD KDMAKRVLRD
150 151
ARLAVAPFVC FDRHTAAHAD VDTLIAQLGL PLFVKPANQG SSVGVSQVRT
200 201
ADAFAAALAL ALAYDHKVLV EAAVAGREIE CAVLGNAVPH ASVCGEVVVH
250 251
DAFYSYATKY ISEHGAEIVI PADIDAQTQQ RIQQIAVQAY QALGCAGMAR
300 301
VDVFLCADGR IVINEVNTLP GFTRISMYPK LWQASGLDYR GLITRLIELA
350 351
LERHTDDQLL RSAVELH
367
Show the unformatted sequence. |
| Checksums: |
CRC64:4318A8A5DA76F328
MD5:a85ff621d3560037e926154b415d62aa
|
Structures
For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.
| Pfam family | UniProt residues | PDB ID | PDB chain ID | PDB residues | View |
|---|---|---|---|---|---|
| Dala_Dala_lig_C | 147 - 348 | 3E5N | A | 147 - 348 | Jmol AstexViewer SPICE |
| 3R5F | A | 147 - 348 | Jmol AstexViewer SPICE | ||
| 3RFC | A | 147 - 348 | Jmol AstexViewer SPICE | ||
| Dala_Dala_lig_N | 4 - 130 | 3E5N | A | 4 - 130 | Jmol AstexViewer SPICE |
| 3R5F | A | 4 - 130 | Jmol AstexViewer SPICE | ||
| 3RFC | A | 4 - 130 | Jmol AstexViewer SPICE |