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4  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: NANB_STRPN (Q54727)

Summary

This is the summary of UniProt entry NANB_STRPN (Q54727).

Description: Sialidase B EC=3.2.1.18
Source organism: Streptococcus pneumoniae (NCBI taxonomy ID 1313)
View Pfam proteome data.
Length: 697 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
sig_p n/a 1 29
Pfam A Sialidase 42 228
low_complexity n/a 50 66
disorder n/a 276 277
Pfam A BNR 280 291
disorder n/a 356 357
disorder n/a 394 396
disorder n/a 403 405

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q54727. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MNKRGLYSKL GISVVGISLL MGVPTLIHAN ELNYGQLSIS PIFQGGSYQL
50
51
NNKSIDISSL LLDKLSGESQ TVVMKFKADK PNSLQALFGL SNSKAGFKNN
100
101
YFSIFMRDSG EIGVEIRDAQ KGINYLFSRP ASLWGKHKGQ AVENTLVFVS
150
151
DSKDKTYTMY VNGIEVFSET VDTFLPISNI NGIDKATLGA VNREGKEHYL
200
201
AKGSIDEISL FNKAISDQEV STIPLSNPFQ LIFQSGDSTQ ANYFRIPTLY
250
251
TLSSGRVLSS IDARYGGTHD SKSKINIATS YSDDNGKTWS EPIFAMKFND
300
301
YEEQLVYWPR DNKLKNSQIS GSASFIDSSI VEDKKSGKTI LLADVMPAGI
350
351
GNNNANKADS GFKEINGHYY LKLKKNGDND FRYTVRENGV VYNETTNKPT
400
401
NYTINDKYEV LEGGKSLTVE QYSVDFDSGS LRERHNGKQV PMNVFYKDSL
450
451
FKVTPTNYIA MTTSQNRGES WEQFKLLPPF LGEKHNGTYL CPGQGLALKS
500
501
SNRLIFATYT SGELTYLISD DSGQTWKKSS ASIPFKNATA EAQMVELRDG
550
551
VIRTFFRTTT GKIAYMTSRD SGETWSKVSY IDGIQQTSYG TQVSAIKYSQ
600
601
LIDGKEAVIL STPNSRSGRK GGQLVVGLVN KEDDSIDWKY HYDIDLPSYG
650
651
YAYSAITELP NHHIGVLFEK YDSWSRNELH LSNVVQYIDL EINDLTK   
697
 

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Checksums:
CRC64:A0D9F9AFDE46AFD7
MD5:f38b14c33ebcbde4ac557aaabac7dac3

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
BNR 280 - 291 2JKB A 280 - 291 Jmol AstexViewer SPICE
2VW0 A 280 - 291 Jmol AstexViewer SPICE
2VW1 A 280 - 291 Jmol AstexViewer SPICE
2VW2 A 280 - 291 Jmol AstexViewer SPICE
Sialidase 42 - 228 2JKB A 42 - 228 Jmol AstexViewer SPICE
2VW0 A 42 - 228 Jmol AstexViewer SPICE
2VW1 A 42 - 228 Jmol AstexViewer SPICE
2VW2 A 42 - 228 Jmol AstexViewer SPICE