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1  structure 1  species 0  interactions 1  sequence 1  architecture

Protein: RPOM_THECE (Q56254)

Summary

This is the summary of UniProt entry RPOM_THECE (Q56254).

Description: DNA-directed RNA polymerase subunit M EC=2.7.7.6
Source organism: Thermococcus celer (NCBI taxonomy ID 2264)
Length: 110 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A RNA_POL_M_15KD 1 34
disorder n/a 38 44
Pfam A TFIIS_C 69 107

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q56254. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MKFCPKCGNL MLPDRKRKVW VCRSCGYEEP FDEEKDREKT VIKQEVKHKP
50
51
DEGIVVIEQD LKTLPTTKIT CPKCGNDTAY WWEMQTRAGD EPSTIFYKCT
100
101
KCGHTWRSYE                                            
110
 

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Checksums:
CRC64:3AE99D6905FD4E4E
MD5:1a5394ba893cdbf05403b0fd6a9abaff

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
TFIIS_C 69 - 107 1QYP A 16 - 54 Jmol AstexViewer SPICE