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6  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: DDL_THET8 (Q5SHZ3)

Summary

This is the summary of UniProt entry DDL_THET8 (Q5SHZ3).

Description: D-alanine--D-alanine ligase EC=6.3.2.4
Source organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (NCBI taxonomy ID 300852)
View Pfam proteome data.
Length: 319 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A Dala_Dala_lig_N 1 105
sig_p n/a 1 21
low_complexity n/a 44 58
disorder n/a 56 57
Pfam A Dala_Dala_lig_C 122 315
low_complexity n/a 141 154
disorder n/a 240 241

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q5SHZ3. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MRVLLIAGGV SPEHEVSLLS AEGVLRHIPF PTDLAVIAQD GRWLLGEKAL
50
51
TALEAKAAPE GEHPFPPPLS WERYDVVFPL LHGRFGEDGT VQGFLELLGK
100
101
PYVGAGVAAS ALCMDKDLSK RVLAQAGVPV VPWVAVRKGE PPVVPFDPPF
150
151
FVKPANTGSS VGISRVERFQ DLEAALALAF RYDEKAVVEK ALSPVRELEV
200
201
GVLGNVFGEA SPVGEVRYEA PFYDYETKYT PGRAELLIPA PLDPGTQETV
250
251
QELALKAYKV LGVRGMARVD FFLAEGELYL NELNTIPGFT PTSMYPRLFE
300
301
AGGVAYPELL RRLVELALT                                  
319
 

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Checksums:
CRC64:85E6F0AA367A13AF
MD5:ff970313209bfc55f46decf25bff1f99

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Dala_Dala_lig_C 122 - 315 2YZG A 122 - 315 Jmol AstexViewer SPICE
B 122 - 315 Jmol AstexViewer SPICE
C 122 - 315 Jmol AstexViewer SPICE
2YZM A 122 - 315 Jmol AstexViewer SPICE
B 122 - 315 Jmol AstexViewer SPICE
C 122 - 315 Jmol AstexViewer SPICE
2YZN A 122 - 315 Jmol AstexViewer SPICE
B 122 - 315 Jmol AstexViewer SPICE
C 122 - 315 Jmol AstexViewer SPICE
2ZDG A 122 - 315 Jmol AstexViewer SPICE
B 122 - 315 Jmol AstexViewer SPICE
C 122 - 315 Jmol AstexViewer SPICE
D 122 - 315 Jmol AstexViewer SPICE
2ZDH A 122 - 315 Jmol AstexViewer SPICE
B 122 - 315 Jmol AstexViewer SPICE
C 122 - 315 Jmol AstexViewer SPICE
D 122 - 315 Jmol AstexViewer SPICE
2ZDQ A 122 - 315 Jmol AstexViewer SPICE
B 122 - 315 Jmol AstexViewer SPICE
Dala_Dala_lig_N 1 - 105 2YZG A 1 - 105 Jmol AstexViewer SPICE
B 1 - 105 Jmol AstexViewer SPICE
C 1 - 105 Jmol AstexViewer SPICE
2YZM A 1 - 105 Jmol AstexViewer SPICE
B 1 - 105 Jmol AstexViewer SPICE
C 1 - 105 Jmol AstexViewer SPICE
2YZN A 1 - 105 Jmol AstexViewer SPICE
B 1 - 105 Jmol AstexViewer SPICE
C 1 - 105 Jmol AstexViewer SPICE
2ZDG A 1 - 105 Jmol AstexViewer SPICE
B 1 - 105 Jmol AstexViewer SPICE
C 1 - 105 Jmol AstexViewer SPICE
D 1 - 105 Jmol AstexViewer SPICE
2ZDH A 1 - 105 Jmol AstexViewer SPICE
B 1 - 105 Jmol AstexViewer SPICE
C 1 - 105 Jmol AstexViewer SPICE
D 1 - 105 Jmol AstexViewer SPICE
2ZDQ A 1 - 105 Jmol AstexViewer SPICE
B 1 - 105 Jmol AstexViewer SPICE