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27  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: COX1_THET8 (Q5SJ79)

Summary

This is the summary of UniProt entry COX1_THET8 (Q5SJ79).

Description: Cytochrome c oxidase subunit 1 EC=1.9.3.1
Source organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (NCBI taxonomy ID 300852)
View Pfam proteome data.
Length: 562 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A COX1 17 483
transmembrane n/a 21 44
transmembrane n/a 64 92
transmembrane n/a 104 125
transmembrane n/a 145 164
transmembrane n/a 184 207
low_complexity n/a 198 209
transmembrane n/a 227 251
transmembrane n/a 263 281
low_complexity n/a 267 275
transmembrane n/a 301 324
low_complexity n/a 324 334
transmembrane n/a 345 365
low_complexity n/a 351 363
transmembrane n/a 385 408
transmembrane n/a 420 443
transmembrane n/a 463 489
low_complexity n/a 472 489
transmembrane n/a 527 551

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q5SJ79. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MAVRASEISR VYEAYPEKKA TLYFLVLGFL ALIVGSLFGP FQALNYGNVD
50
51
AYPLLKRLLP FVQSYYQGLT LHGVLNAIVF TQLFAQAIMV YLPARELNMR
100
101
PNMGLMWLSW WMAFIGLVVA ALPLLANEAT VLYTFYPPLK GHWAFYLGAS
150
151
VFVLSTWVSI YIVLDLWRRW KAANPGKVTP LVTYMAVVFW LMWFLASLGL
200
201
VLEAVLFLLP WSFGLVEGVD PLVARTLFWW TGHPIVYFWL LPAYAIIYTI
250
251
LPKQAGGKLV SDPMARLAFL LFLLLSTPVG FHHQFADPGI DPTWKMIHSV
300
301
LTLFVAVPSL MTAFTVAASL EFAGRLRGGR GLFGWIRALP WDNPAFVAPV
350
351
LGLLGFIPGG AGGIVNASFT LDYVVHNTAW VPGHFHLQVA SLVTLTAMGS
400
401
LYWLLPNLTG KPISDAQRRL GLAVVWLWFL GMMIMAVGLH WAGLLNVPRR
450
451
AYIAQVPDAY PHAAVPMVFN VLAGIVLLVA LLLFIYGLFS VLLSRERKPE
500
501
LAEAPLPFAE VISGPEDRRL VLAMDRIGFW FAVAAILVVL AYGPTLVQLF
550
551
GHLNPVPGWR LW                                         
562
 

Show the unformatted sequence.

Checksums:
CRC64:769B9E2F2033617B
MD5:79dc9cafc09fdbea212c26fc2db2bc6a

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
COX1 17 - 483 1EHK A 17 - 483 Jmol AstexViewer SPICE
1XME A 17 - 483 Jmol AstexViewer SPICE
2QPD A 17 - 483 Jmol AstexViewer SPICE
2QPE A 17 - 483 Jmol AstexViewer SPICE
3BVD A 17 - 483 Jmol AstexViewer SPICE
3EH3 A 17 - 483 Jmol AstexViewer SPICE
3EH4 A 17 - 483 Jmol AstexViewer SPICE
3EH5 A 17 - 483 Jmol AstexViewer SPICE
3QJQ A 17 - 483 Jmol AstexViewer SPICE
3QJR A 17 - 483 Jmol AstexViewer SPICE
3QJS A 17 - 483 Jmol AstexViewer SPICE
3QJT A 17 - 483 Jmol AstexViewer SPICE
3QJU A 17 - 483 Jmol AstexViewer SPICE
3QJV A 17 - 483 Jmol AstexViewer SPICE
3S33 A 17 - 483 Jmol AstexViewer SPICE
3S38 A 17 - 483 Jmol AstexViewer SPICE
3S39 A 17 - 483 Jmol AstexViewer SPICE
3S3A A 17 - 483 Jmol AstexViewer SPICE
3S3B A 17 - 483 Jmol AstexViewer SPICE
3S3C A 17 - 483 Jmol AstexViewer SPICE
3S3D A 17 - 483 Jmol AstexViewer SPICE
3S8F A 17 - 483 Jmol AstexViewer SPICE
3S8G A 17 - 483 Jmol AstexViewer SPICE
4ESL A 17 - 483 Jmol AstexViewer SPICE
4EV3 A 17 - 483 Jmol AstexViewer SPICE
4F05 A 17 - 483 Jmol AstexViewer SPICE
4FA7 A 17 - 483 Jmol AstexViewer SPICE