Summary
This is the summary of UniProt entry COX1_THET8 (Q5SJ79).
| Description: | Cytochrome c oxidase subunit 1 EC=1.9.3.1 |
| Source organism: |
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
(NCBI taxonomy ID
300852)
View Pfam proteome data. |
| Length: | 562 amino acids |
Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.
Pfam domains
| Source | Domain | Start | End |
|---|---|---|---|
| Pfam A | COX1 | 17 | 483 |
| transmembrane | n/a | 21 | 44 |
| transmembrane | n/a | 64 | 92 |
| transmembrane | n/a | 104 | 125 |
| transmembrane | n/a | 145 | 164 |
| transmembrane | n/a | 184 | 207 |
| low_complexity | n/a | 198 | 209 |
| transmembrane | n/a | 227 | 251 |
| transmembrane | n/a | 263 | 281 |
| low_complexity | n/a | 267 | 275 |
| transmembrane | n/a | 301 | 324 |
| low_complexity | n/a | 324 | 334 |
| transmembrane | n/a | 345 | 365 |
| low_complexity | n/a | 351 | 363 |
| transmembrane | n/a | 385 | 408 |
| transmembrane | n/a | 420 | 443 |
| transmembrane | n/a | 463 | 489 |
| low_complexity | n/a | 472 | 489 |
| transmembrane | n/a | 527 | 551 |
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Sequence annotations
This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...
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Sequence information
This is the amino acid sequence of the UniProt sequence database entry with the accession Q5SJ79. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.
| Sequence: | 1
MAVRASEISR VYEAYPEKKA TLYFLVLGFL ALIVGSLFGP FQALNYGNVD
50 51
AYPLLKRLLP FVQSYYQGLT LHGVLNAIVF TQLFAQAIMV YLPARELNMR
100 101
PNMGLMWLSW WMAFIGLVVA ALPLLANEAT VLYTFYPPLK GHWAFYLGAS
150 151
VFVLSTWVSI YIVLDLWRRW KAANPGKVTP LVTYMAVVFW LMWFLASLGL
200 201
VLEAVLFLLP WSFGLVEGVD PLVARTLFWW TGHPIVYFWL LPAYAIIYTI
250 251
LPKQAGGKLV SDPMARLAFL LFLLLSTPVG FHHQFADPGI DPTWKMIHSV
300 301
LTLFVAVPSL MTAFTVAASL EFAGRLRGGR GLFGWIRALP WDNPAFVAPV
350 351
LGLLGFIPGG AGGIVNASFT LDYVVHNTAW VPGHFHLQVA SLVTLTAMGS
400 401
LYWLLPNLTG KPISDAQRRL GLAVVWLWFL GMMIMAVGLH WAGLLNVPRR
450 451
AYIAQVPDAY PHAAVPMVFN VLAGIVLLVA LLLFIYGLFS VLLSRERKPE
500 501
LAEAPLPFAE VISGPEDRRL VLAMDRIGFW FAVAAILVVL AYGPTLVQLF
550 551
GHLNPVPGWR LW
562
Show the unformatted sequence. |
| Checksums: |
CRC64:769B9E2F2033617B
MD5:79dc9cafc09fdbea212c26fc2db2bc6a
|
Structures
For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.