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7  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: TOM20_RAT (Q62760)

Summary

This is the summary of UniProt entry TOM20_RAT (Q62760).

Description: Mitochondrial import receptor subunit TOM20 homolog
Source organism: Rattus norvegicus (Rat) (NCBI taxonomy ID 10116)
View Pfam proteome data.
Length: 145 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
transmembrane n/a 6 24
Pfam A MAS20 8 128
disorder n/a 34 42
low_complexity n/a 102 120

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q62760. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MVGRNSAIAA GVCGALFIGY CIYFDRKRRS DPNFKNRLRE RRKKQKLAKE
50
51
RAGLSKLPDL KDAEAVQKFF LEEIQLGEEL LAQGDYEKGV DHLTNAIAVC
100
101
GQPQQLLQVL QQTLPPPVFQ MLLTKLPTIS QRIVSAQSLA EDDVE     
145
 

Show the unformatted sequence.

Checksums:
CRC64:50E3BD25AD5C9B3B
MD5:fdf81c3ad87d36f99a3a9795928d9e6c

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
MAS20 51 - 128 1OM2 A 1 - 78 Jmol AstexViewer SPICE
59 - 123 2V1S D 59 - 123 Jmol AstexViewer SPICE
59 - 125 3AX5 C 59 - 125 Jmol AstexViewer SPICE
59 - 126 2V1S C 59 - 126 Jmol AstexViewer SPICE
E 59 - 126 Jmol AstexViewer SPICE
2V1T A 59 - 126 Jmol AstexViewer SPICE
B 59 - 126 Jmol AstexViewer SPICE
3AWR A 59 - 126 Jmol AstexViewer SPICE
3AX2 A 59 - 126 Jmol AstexViewer SPICE
C 59 - 126 Jmol AstexViewer SPICE
3AX3 E 59 - 126 Jmol AstexViewer SPICE
G 59 - 126 Jmol AstexViewer SPICE
3AX5 A 59 - 126 Jmol AstexViewer SPICE
61 - 126 2V1S A 61 - 126 Jmol AstexViewer SPICE
B 61 - 126 Jmol AstexViewer SPICE
3AX2 G 61 - 126 Jmol AstexViewer SPICE
3AX3 A 61 - 126 Jmol AstexViewer SPICE
C 61 - 126 Jmol AstexViewer SPICE
62 - 126 3AX2 E 62 - 126 Jmol AstexViewer SPICE
63 - 126 2V1S F 63 - 126 Jmol AstexViewer SPICE
3AWR B 63 - 126 Jmol AstexViewer SPICE
63 - 76 2V1S G 63 - 76 Jmol AstexViewer SPICE

TreeFam

Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.