Summary
This is the summary of UniProt entry JMJD6_HUMAN (Q6NYC1).
| Description: | Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 EC=1.14.11.- |
| Source organism: |
Homo sapiens (Human)
(NCBI taxonomy ID
9606)
View Pfam proteome data. |
| Length: | 403 amino acids |
Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.
Pfam domains
| Source | Domain | Start | End |
|---|---|---|---|
| Pfam B | Pfam-B_22969 | 1 | 39 |
| disorder | n/a | 1 | 14 |
| Pfam A | JmjC | 174 | 288 |
| disorder | n/a | 219 | 223 |
| disorder | n/a | 326 | 328 |
| disorder | n/a | 334 | 403 |
| low_complexity | n/a | 340 | 369 |
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Sequence annotations
This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...
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Sequence information
This is the amino acid sequence of the UniProt sequence database entry with the accession Q6NYC1. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.
| Sequence: | 1
MNHKSKKRIR EAKRSARPEL KDSLDWTRHN YYESFSLSPA AVADNVERAD
50 51
ALQLSVEEFV ERYERPYKPV VLLNAQEGWS AQEKWTLERL KRKYRNQKFK
100 101
CGEDNDGYSV KMKMKYYIEY MESTRDDSPL YIFDSSYGEH PKRRKLLEDY
150 151
KVPKFFTDDL FQYAGEKRRP PYRWFVMGPP RSGTGIHIDP LGTSAWNALV
200 201
QGHKRWCLFP TSTPRELIKV TRDEGGNQQD EAITWFNVIY PRTQLPTWPP
250 251
EFKPLEILQK PGETVFVPGG WWHVVLNLDT TIAITQNFAS STNFPVVWHK
300 301
TVRGRPKLSR KWYRILKQEH PELAVLADSV DLQESTGIAS DSSSDSSSSS
350 351
SSSSSDSDSE CESGSEGDGT VHRRKKRRTC SMVGNGDTTS QDDCVSKERS
400 401
SSR
403
Show the unformatted sequence. |
| Checksums: |
CRC64:9C9AADA98B24B035
MD5:aad8c6e49feb833d3896fe52b23b3980
|
Structures
For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.
| Pfam family | UniProt residues | PDB ID | PDB chain ID | PDB residues | View |
|---|---|---|---|---|---|
| JmjC | 174 - 288 | 3K2O | A | 174 - 288 | Jmol AstexViewer SPICE |
| B | 174 - 288 | Jmol AstexViewer SPICE | |||
| 3LD8 | A | 174 - 288 | Jmol AstexViewer SPICE | ||
| 3LDB | A | 174 - 288 | Jmol AstexViewer SPICE |