Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
1  structure 1  species 0  interactions 1  sequence 1  architecture

Protein: Q88B84_PSESM (Q88B84)

Summary

This is the summary of UniProt entry Q88B84_PSESM (Q88B84).

Description: Peptidyl-prolyl cis-trans isomerase EC=5.2.1.8
Source organism: Pseudomonas syringae pv. tomato (strain DC3000) (NCBI taxonomy ID 223283)
View Pfam proteome data.
Length: 224 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
sig_p n/a 1 18
low_complexity n/a 5 23
Pfam A FKBP_N 7 126
disorder n/a 26 27
disorder n/a 29 30
disorder n/a 85 106
disorder n/a 124 144
Pfam A FKBP_C 134 220

Show or hide domain scores.

Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

Note: it can take a few seconds for this image to be generated and loaded.

Loading feature alignment...

Show sources update panel.

Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q88B84. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MSRYLLTSLF LLLPLAQAAE APPDNDAHDL AYSLGASLGE RLHQEVPDLD
50
51
LKALVDGLKQ AYQGKPLALK QERIDQILRE HDAAIAQAET AGTDAPTEAA
100
101
LKAERTFMAG EKAKPGVKEL ADGILMTELT PGTGPKPDAN GRVEVRYVGR
150
151
LPDGKIFDQS TQPQWFRLDS VISGWTSALQ NMPTGAKWRL VIPSDQAYGA
200
201
EGAGDLIDPF TPLVFEIELI AVSQ                            
224
 

Show the unformatted sequence.

Checksums:
CRC64:9849CDC6FB98EE41
MD5:9a24a7ecbb41112bcc05aec4fddedb07

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
FKBP_C 134 - 220 3OE2 A 134 - 220 Jmol AstexViewer SPICE
FKBP_N 92 - 126 3OE2 A 92 - 126 Jmol AstexViewer SPICE