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2  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: Q8JU64_9REOV (Q8JU64)

Summary

This is the summary of UniProt entry Q8JU64_9REOV (Q8JU64).

Description: Core protein VP6
Source organism: Grass carp reovirus (NCBI taxonomy ID 128987)
Length: 412 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A Sigma_1_2 1 411
low_complexity n/a 165 176
low_complexity n/a 254 262
low_complexity n/a 396 409

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q8JU64. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MAQRQFFGLT YNFYGQPAPL FDLNDLQELA GCYARPWTSR FSHLAISTGS
50
51
LPVWSARYPS VASRNIVVNT LLGAHLNPFA GGQITSHQGI TWRDPVLSSL
100
101
APVPAIQPPP VWAVAENVLL DSNNYPTYVL NLSSMWPINQ DVHIMTMWAL
150
151
SDQGPIYHLE VPVDPMPAAT TAALMAYTGV PIAHLAQTAY RFAGQLPQSP
200
201
DSTMVSTIRW LSAIWFGSLT GRLNRSRTCN GFYFEFAKPA LNPDQAVLKW
250
251
NDGARAAPPA AAQSSYIRCI SPHWQHQIVE VAGALMSQSV TAVTGLPALI
300
301
DEATLPAWSQ GVANLTGNGQ GVVPCLDYNP VPMAAARHLQ WRQDGLITAA
350
351
QEAQLNNDYT AYALTIERHL TAMLVANPIA AGRMPIQPFN AADFGQAGQT
400
401
AAAVALAQAM FV                                         
412
 

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Checksums:
CRC64:59E8449403C9644F
MD5:e577939cfc63436fc751222c90f6f68a

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Sigma_1_2 1 - 411 3IYL U 1 - 411 Jmol AstexViewer SPICE
V 1 - 411 Jmol AstexViewer SPICE
3K1Q D 1 - 411 Jmol AstexViewer SPICE
E 1 - 411 Jmol AstexViewer SPICE