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1  structure 1  species 0  interactions 1  sequence 1  architecture

Protein: RL52_ORYSJ (Q8L4L4)

Summary

This is the summary of UniProt entry RL52_ORYSJ (Q8L4L4).

Description: 60S ribosomal protein L5-2
Source organism: Oryza sativa subsp. japonica (Rice) (NCBI taxonomy ID 39947)
View Pfam proteome data.
Length: 304 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
low_complexity n/a 17 31
Pfam A Ribosomal_L18p 30 173
disorder n/a 35 36
disorder n/a 40 41
disorder n/a 127 128
low_complexity n/a 161 172
Pfam A Ribosomal_L18_c 192 284
disorder n/a 250 262
disorder n/a 264 270
disorder n/a 285 304
low_complexity n/a 295 304

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q8L4L4. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MSLQGGFVKT QKTHAYFKRF QVKFKRRRQG KTDYRARIRL TNQDKNKYNT
50
51
PKYRFVTNKD ITAQIVYATI AGDIVMAAAY SHELPRYGLE VGLTNYAAAY
100
101
CTGLLLARRV LTLRGLDQEY EGNVEATGED YYVEPADERR PFRALLDVGL
150
151
IRTTTGNRVF GALKGALDGG LDIPHSDKRF AGFKKDEKQL DSDIHRKYIY
200
201
GGHVADYMRS MAEEEPEKFQ AHFSEYLKKG IDADGMESLY KKVHAAIRAD
250
251
PTMAKSTKKE PATHKRYNLK KLTYEQRKAS LVERLNALNS SAGADDDDEE
300
301
EDDE                                                  
304
 

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Checksums:
CRC64:6C0307C860FB6905
MD5:48a91b4b5683bfca9d789ef08c7cb13c

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Ribosomal_L18_c 192 - 284 3IZR Q 192 - 284 Jmol AstexViewer SPICE
Ribosomal_L18p 30 - 173 3IZR Q 30 - 173 Jmol AstexViewer SPICE