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16  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RPOC_THET8 (Q8RQE8)

Summary

This is the summary of UniProt entry RPOC_THET8 (Q8RQE8).

Description: DNA-directed RNA polymerase subunit beta' EC=2.7.7.6
Source organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (NCBI taxonomy ID 300852)
View Pfam proteome data.
Length: 1524 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A RNA_pol_Rpb1_1 2 174
low_complexity n/a 209 220
low_complexity n/a 254 267
low_complexity n/a 315 327
low_complexity n/a 367 385
disorder n/a 414 415
Pfam A RNA_pol_Rpb1_1 418 618
low_complexity n/a 434 447
coiled_coil n/a 461 481
low_complexity n/a 464 480
low_complexity n/a 486 495
low_complexity n/a 539 558
disorder n/a 585 602
Pfam A RNA_pol_Rpb1_2 620 765
disorder n/a 669 671
Pfam A RNA_pol_Rpb1_3 768 954
low_complexity n/a 938 951
Pfam A RNA_pol_Rpb1_4 983 1068
Pfam A RNA_pol_Rpb1_5 1064 1437
low_complexity n/a 1147 1164
disorder n/a 1330 1332
coiled_coil n/a 1488 1508
low_complexity n/a 1493 1513
disorder n/a 1498 1524

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q8RQE8. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MKKEVRKVRI ALASPEKIRS WSYGEVEKPE TINYRTLKPE RDGLFDERIF
50
51
GPIKDYECAC GKYKRQRFEG KVCERCGVEV TKSIVRRYRM GHIELATPAA
100
101
HIWFVKDVPS KIGTLLDLSA TELEQVLYFS KYIVLDPKGA ILNGVPVEKR
150
151
QLLTDEEYRE LRYGKQETYP LPPGVDALVK DGEEVVKGQE LAPGVVSRLD
200
201
GVALYRFPRR VRVEYVKKER AGLRLPLAAW VEKEAYKPGE ILAELPEPYL
250
251
FRAEEEGVVE LKELEEGAFL VLRREDEPVA TYFLPVGMTP LVVHGEIVEK
300
301
GQPLAEAKGL LRMPRQVRAA QVEAEEEGET VYLTLFLEWT EPKDYRVQPH
350
351
MNVVVPEGAR VEAGDKIVAA IDPEEEVIAE AEGVVHLHEP ASILVVKARV
400
401
YPFEDDVEVS TGDRVAPGDV LADGGKVKSD VYGRVEVDLV RNVVRVVESY
450
451
DIDARMGAEA IQQLLKELDL EALEKELLEE MKHPSRARRA KARKRLEVVR
500
501
AFLDSGNRPE WMILEAVPVL PPDLRPMVQV DGGRFATSDL NDLYRRLINR
550
551
NNRLKKLLAQ GAPEIIIRNE KRMLQEAVDA LLDNGRRGAP VTNPGSDRPL
600
601
RSLTDILSGK QGRFRQNLLG KRVDYSGRSV IVVGPQLKLH QCGLPKRMAL
650
651
ELFKPFLLKK MEEKGIAPNV KAARRMLERQ RDIKDEVWDA LEEVIHGKVV
700
701
LLNRAPTLHR LGIQAFQPVL VEGQSIQLHP LVCEAFNADF DGDQMAVHVP
750
751
LSSFAQAEAR IQMLSAHNLL SPASGEPLAK PSRDIILGLY YITQVRKEKK
800
801
GAGLEFATPE EALAAHERGE VALNAPIKVA GRETSVGRLK YVFANPDEAL
850
851
LAVAHGIVDL QDVVTVRYMG KRLETSPGRI LFARIVAEAV EDEKVAWELI
900
901
QLDVPQEKNS LKDLVYQAFL RLGMEKTARL LDALKYYGFT FSTTSGITIG
950
951
IDDAVIPEEK KQYLEEADRK LLQIEQAYEM GFLTDRERYD QILQLWTETT
1000
1001
EKVTQAVFKN FEENYPFNPL YVMAQSGARG NPQQIRQLCG LRGLMQKPSG
1050
1051
ETFEVPVRSS FREGLTVLEY FISSHGARKG GADTALRTAD SGYLTRKLVD
1100
1101
VTHEIVVREA DCGTTNYISV PLFQPDEVTR SLRLRKRADI EAGLYGRVLA
1150
1151
REVEVLGVRL EEGRYLSMDD VHLLIKAAEA GEIQEVPVRS PLTCQTRYGV
1200
1201
CQKCYGYDLS MARPVSIGEA VGIVAAQSIG EPGTQLTMRT FHTGGVAGAA
1250
1251
DITQGLPRVI ELFEARRPKA KAVISEIDGV VRIEETEEKL SVFVESEGFS
1300
1301
KEYKLPKEAR LLVKDGDYVE AGQPLTRGAI DPHQLLEAKG PEAVERYLVE
1350
1351
EIQKVYRAQG VKLHDKHIEI VVRQMMKYVE VTDPGDSRLL EGQVLEKWDV
1400
1401
EALNERLIAE GKTPVAWKPL LMGVTKSALS TKSWLSAASF QNTTHVLTEA
1450
1451
AIAGKKDELI GLKENVILGR LIPAGTGSDF VRFTQVVDQK TLKAIEEARK
1500
1501
EAVEAKERPA ARRGVKREQP GKQA                            
1524
 

Show the unformatted sequence.

Checksums:
CRC64:A7B335945B08E3A7
MD5:66b30ca3963eace330a66d01ec310453

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
RNA_pol_Rpb1_1 2 - 174 1IW7 D 2 - 174 Jmol AstexViewer SPICE
N 2 - 174 Jmol AstexViewer SPICE
1SMY D 2 - 174 Jmol AstexViewer SPICE
N 2 - 174 Jmol AstexViewer SPICE
1ZYR D 2 - 174 Jmol AstexViewer SPICE
N 2 - 174 Jmol AstexViewer SPICE
2A68 D 2 - 174 Jmol AstexViewer SPICE
N 2 - 174 Jmol AstexViewer SPICE
2A69 D 2 - 174 Jmol AstexViewer SPICE
N 2 - 174 Jmol AstexViewer SPICE
2A6E D 2 - 174 Jmol AstexViewer SPICE
N 2 - 174 Jmol AstexViewer SPICE
2A6H D 2 - 174 Jmol AstexViewer SPICE
N 2 - 174 Jmol AstexViewer SPICE
2BE5 D 2 - 174 Jmol AstexViewer SPICE
N 2 - 174 Jmol AstexViewer SPICE
2CW0 D 2 - 174 Jmol AstexViewer SPICE
N 2 - 174 Jmol AstexViewer SPICE
2O5I D 2 - 174 Jmol AstexViewer SPICE
N 2 - 174 Jmol AstexViewer SPICE
2O5J D 2 - 174 Jmol AstexViewer SPICE
N 2 - 174 Jmol AstexViewer SPICE
2PPB D 2 - 174 Jmol AstexViewer SPICE
N 2 - 174 Jmol AstexViewer SPICE
3AOH D 2 - 174 Jmol AstexViewer SPICE
I 2 - 174 Jmol AstexViewer SPICE
N 2 - 174 Jmol AstexViewer SPICE
3AOI D 2 - 174 Jmol AstexViewer SPICE
I 2 - 174 Jmol AstexViewer SPICE
3DXJ D 2 - 174 Jmol AstexViewer SPICE
N 2 - 174 Jmol AstexViewer SPICE
3EQL D 2 - 174 Jmol AstexViewer SPICE
N 2 - 174 Jmol AstexViewer SPICE
3 - 174 3AOI N 3 - 174 Jmol AstexViewer SPICE
418 - 618 1IW7 D 418 - 618 Jmol AstexViewer SPICE
N 418 - 618 Jmol AstexViewer SPICE
1SMY D 418 - 618 Jmol AstexViewer SPICE
N 418 - 618 Jmol AstexViewer SPICE
1ZYR D 418 - 618 Jmol AstexViewer SPICE
N 418 - 618 Jmol AstexViewer SPICE
2A68 D 418 - 618 Jmol AstexViewer SPICE
N 418 - 618 Jmol AstexViewer SPICE
2A69 D 418 - 618 Jmol AstexViewer SPICE
N 418 - 618 Jmol AstexViewer SPICE
2A6E D 418 - 618 Jmol AstexViewer SPICE
N 418 - 618 Jmol AstexViewer SPICE
2A6H D 418 - 618 Jmol AstexViewer SPICE
N 418 - 618 Jmol AstexViewer SPICE
2BE5 D 418 - 618 Jmol AstexViewer SPICE
N 418 - 618 Jmol AstexViewer SPICE
2CW0 D 418 - 618 Jmol AstexViewer SPICE
N 418 - 618 Jmol AstexViewer SPICE
2O5I D 418 - 618 Jmol AstexViewer SPICE
N 418 - 618 Jmol AstexViewer SPICE
2O5J D 418 - 618 Jmol AstexViewer SPICE
N 418 - 618 Jmol AstexViewer SPICE
2PPB D 418 - 618 Jmol AstexViewer SPICE
N 418 - 618 Jmol AstexViewer SPICE
3AOH D 418 - 618 Jmol AstexViewer SPICE
I 418 - 618 Jmol AstexViewer SPICE
N 418 - 618 Jmol AstexViewer SPICE
3AOI D 418 - 618 Jmol AstexViewer SPICE
I 418 - 618 Jmol AstexViewer SPICE
N 418 - 618 Jmol AstexViewer SPICE
3DXJ D 418 - 618 Jmol AstexViewer SPICE
N 418 - 618 Jmol AstexViewer SPICE
3EQL D 418 - 618 Jmol AstexViewer SPICE
N 418 - 618 Jmol AstexViewer SPICE
RNA_pol_Rpb1_2 620 - 765 1IW7 D 620 - 765 Jmol AstexViewer SPICE
N 620 - 765 Jmol AstexViewer SPICE
1SMY D 620 - 765 Jmol AstexViewer SPICE
N 620 - 765 Jmol AstexViewer SPICE
1ZYR D 620 - 765 Jmol AstexViewer SPICE
N 620 - 765 Jmol AstexViewer SPICE
2A68 D 620 - 765 Jmol AstexViewer SPICE
N 620 - 765 Jmol AstexViewer SPICE
2A69 D 620 - 765 Jmol AstexViewer SPICE
N 620 - 765 Jmol AstexViewer SPICE
2A6E D 620 - 765 Jmol AstexViewer SPICE
N 620 - 765 Jmol AstexViewer SPICE
2A6H D 620 - 765 Jmol AstexViewer SPICE
N 620 - 765 Jmol AstexViewer SPICE
2BE5 D 620 - 765 Jmol AstexViewer SPICE
N 620 - 765 Jmol AstexViewer SPICE
2CW0 D 620 - 765 Jmol AstexViewer SPICE
N 620 - 765 Jmol AstexViewer SPICE
2O5I D 620 - 765 Jmol AstexViewer SPICE
N 620 - 765 Jmol AstexViewer SPICE
2O5J D 620 - 765 Jmol AstexViewer SPICE
N 620 - 765 Jmol AstexViewer SPICE
2PPB D 620 - 765 Jmol AstexViewer SPICE
N 620 - 765 Jmol AstexViewer SPICE
3AOH D 620 - 765 Jmol AstexViewer SPICE
I 620 - 765 Jmol AstexViewer SPICE
N 620 - 765 Jmol AstexViewer SPICE
3AOI D 620 - 765 Jmol AstexViewer SPICE
I 620 - 765 Jmol AstexViewer SPICE
N 620 - 765 Jmol AstexViewer SPICE
3DXJ D 620 - 765 Jmol AstexViewer SPICE
N 620 - 765 Jmol AstexViewer SPICE
3EQL D 620 - 765 Jmol AstexViewer SPICE
N 620 - 765 Jmol AstexViewer SPICE
RNA_pol_Rpb1_3 768 - 954 1IW7 D 768 - 954 Jmol AstexViewer SPICE
N 768 - 954 Jmol AstexViewer SPICE
1SMY D 768 - 954 Jmol AstexViewer SPICE
N 768 - 954 Jmol AstexViewer SPICE
1ZYR D 768 - 954 Jmol AstexViewer SPICE
N 768 - 954 Jmol AstexViewer SPICE
2A68 D 768 - 954 Jmol AstexViewer SPICE
N 768 - 954 Jmol AstexViewer SPICE
2A69 D 768 - 954 Jmol AstexViewer SPICE
N 768 - 954 Jmol AstexViewer SPICE
2A6E D 768 - 954 Jmol AstexViewer SPICE
N 768 - 954 Jmol AstexViewer SPICE
2A6H D 768 - 954 Jmol AstexViewer SPICE
N 768 - 954 Jmol AstexViewer SPICE
2BE5 D 768 - 954 Jmol AstexViewer SPICE
N 768 - 954 Jmol AstexViewer SPICE
2CW0 D 768 - 954 Jmol AstexViewer SPICE
N 768 - 954 Jmol AstexViewer SPICE
2O5I D 768 - 954 Jmol AstexViewer SPICE
N 768 - 954 Jmol AstexViewer SPICE
2O5J D 768 - 954 Jmol AstexViewer SPICE
N 768 - 954 Jmol AstexViewer SPICE
2PPB D 768 - 954 Jmol AstexViewer SPICE
N 768 - 954 Jmol AstexViewer SPICE
3AOH D 768 - 954 Jmol AstexViewer SPICE
I 768 - 954 Jmol AstexViewer SPICE
N 768 - 954 Jmol AstexViewer SPICE
3AOI D 768 - 954 Jmol AstexViewer SPICE
I 768 - 954 Jmol AstexViewer SPICE
N 768 - 954 Jmol AstexViewer SPICE
3DXJ D 768 - 954 Jmol AstexViewer SPICE
N 768 - 954 Jmol AstexViewer SPICE
3EQL D 768 - 954 Jmol AstexViewer SPICE
N 768 - 954 Jmol AstexViewer SPICE
RNA_pol_Rpb1_4 983 - 1068 1IW7 D 983 - 1068 Jmol AstexViewer SPICE
N 983 - 1068 Jmol AstexViewer SPICE
1SMY D 983 - 1068 Jmol AstexViewer SPICE
N 983 - 1068 Jmol AstexViewer SPICE
1ZYR D 983 - 1068 Jmol AstexViewer SPICE
N 983 - 1068 Jmol AstexViewer SPICE
2A68 D 983 - 1068 Jmol AstexViewer SPICE
N 983 - 1068 Jmol AstexViewer SPICE
2A69 D 983 - 1068 Jmol AstexViewer SPICE
N 983 - 1068 Jmol AstexViewer SPICE
2A6E D 983 - 1068 Jmol AstexViewer SPICE
N 983 - 1068 Jmol AstexViewer SPICE
2A6H D 983 - 1068 Jmol AstexViewer SPICE
N 983 - 1068 Jmol AstexViewer SPICE
2BE5 D 983 - 1068 Jmol AstexViewer SPICE
N 983 - 1068 Jmol AstexViewer SPICE
2CW0 D 983 - 1068 Jmol AstexViewer SPICE
N 983 - 1068 Jmol AstexViewer SPICE
2O5I D 983 - 1068 Jmol AstexViewer SPICE
N 983 - 1068 Jmol AstexViewer SPICE
2O5J D 983 - 1068 Jmol AstexViewer SPICE
N 983 - 1068 Jmol AstexViewer SPICE
2PPB D 983 - 1068 Jmol AstexViewer SPICE
N 983 - 1068 Jmol AstexViewer SPICE
3AOH D 983 - 1068 Jmol AstexViewer SPICE
I 983 - 1068 Jmol AstexViewer SPICE
N 983 - 1068 Jmol AstexViewer SPICE
3AOI D 983 - 1068 Jmol AstexViewer SPICE
I 983 - 1068 Jmol AstexViewer SPICE
N 983 - 1068 Jmol AstexViewer SPICE
3DXJ D 983 - 1068 Jmol AstexViewer SPICE
N 983 - 1068 Jmol AstexViewer SPICE
3EQL D 983 - 1068 Jmol AstexViewer SPICE
N 983 - 1068 Jmol AstexViewer SPICE
RNA_pol_Rpb1_5 1064 - 1437 1IW7 D 1064 - 1437 Jmol AstexViewer SPICE
N 1064 - 1437 Jmol AstexViewer SPICE
1SMY D 1064 - 1437 Jmol AstexViewer SPICE
N 1064 - 1437 Jmol AstexViewer SPICE
1ZYR D 1064 - 1437 Jmol AstexViewer SPICE
N 1064 - 1437 Jmol AstexViewer SPICE
2A68 D 1064 - 1437 Jmol AstexViewer SPICE
N 1064 - 1437 Jmol AstexViewer SPICE
2A69 D 1064 - 1437 Jmol AstexViewer SPICE
N 1064 - 1437 Jmol AstexViewer SPICE
2A6E D 1064 - 1437 Jmol AstexViewer SPICE
N 1064 - 1437 Jmol AstexViewer SPICE
2A6H D 1064 - 1437 Jmol AstexViewer SPICE
N 1064 - 1437 Jmol AstexViewer SPICE
2BE5 D 1064 - 1437 Jmol AstexViewer SPICE
N 1064 - 1437 Jmol AstexViewer SPICE
2CW0 D 1064 - 1437 Jmol AstexViewer SPICE
N 1064 - 1437 Jmol AstexViewer SPICE
2O5I D 1064 - 1437 Jmol AstexViewer SPICE
N 1064 - 1437 Jmol AstexViewer SPICE
2O5J D 1064 - 1437 Jmol AstexViewer SPICE
N 1064 - 1437 Jmol AstexViewer SPICE
2PPB D 1064 - 1437 Jmol AstexViewer SPICE
N 1064 - 1437 Jmol AstexViewer SPICE
3AOH D 1064 - 1437 Jmol AstexViewer SPICE
I 1064 - 1437 Jmol AstexViewer SPICE
N 1064 - 1437 Jmol AstexViewer SPICE
3AOI D 1064 - 1437 Jmol AstexViewer SPICE
I 1064 - 1437 Jmol AstexViewer SPICE
N 1064 - 1437 Jmol AstexViewer SPICE
3DXJ D 1064 - 1437 Jmol AstexViewer SPICE
N 1064 - 1437 Jmol AstexViewer SPICE
3EQL D 1064 - 1437 Jmol AstexViewer SPICE
N 1064 - 1437 Jmol AstexViewer SPICE