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16  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RPOB_THET8 (Q8RQE9)

Summary

This is the summary of UniProt entry RPOB_THET8 (Q8RQE9).

Description: DNA-directed RNA polymerase subunit beta EC=2.7.7.6
Source organism: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (NCBI taxonomy ID 300852)
View Pfam proteome data.
Length: 1119 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A RNA_pol_Rpb2_1 17 389
Pfam A RNA_pol_Rpb2_2 142 334
Pfam A RNA_pol_Rpb2_3 393 462
disorder n/a 397 398
disorder n/a 405 406
Pfam A RNA_pol_Rpb2_45 471 535
low_complexity n/a 474 484
disorder n/a 495 500
Pfam A RNA_pol_Rpb2_6 541 1026
low_complexity n/a 639 650
disorder n/a 721 722
disorder n/a 758 762
disorder n/a 765 766
disorder n/a 772 774
disorder n/a 785 789
disorder n/a 954 955
Pfam A RNA_pol_Rpb2_7 1028 1104
disorder n/a 1071 1073

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q8RQE9. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MEIKRFGRIR EVIPLPPLTE IQVESYRRAL QADVPPEKRE NVGIQAAFRE
50
51
TFPIEEEDKG KGGLVLDFLE YRLGEPPFPQ DECREKDLTY QAPLYARLQL
100
101
IHKDTGLIKE DEVFLGHIPL MTEDGSFIIN GADRVIVSQI HRSPGVYFTP
150
151
DPARPGRYIA SIIPLPKRGP WIDLEVEPNG VVSMKVNKRK FPLVLLLRVL
200
201
GYDQETLARE LGAYGELVQG LMDESVFAMR PEEALIRLFT LLRPGDPPKR
250
251
DKAVAYVYGL IADPRRYDLG EAGRYKAEEK LGIRLSGRTL ARFEDGEFKD
300
301
EVFLPTLRYL FALTAGVPGH EVDDIDHLGN RRIRTVGELM TDQFRVGLAR
350
351
LARGVRERML MGSEDSLTPA KLVNSRPLEA AIREFFSRSQ LSQFKDETNP
400
401
LSSLRHKRRI SALGPGGLTR ERAGFDVRDV HRTHYGRICP VETPEGANIG
450
451
LITSLAAYAR VDELGFIRTP YRRVVGGVVT DEVVYMTATE EDRYTIAQAN
500
501
TPLEGNRIAA ERVVARRKGE PVIVSPEEVE FMDVSPKQVF SVNTNLIPFL
550
551
EHDDANRALM GSNMQTQAVP LIRAQAPVVM TGLEERVVRD SLAALYAEED
600
601
GEVAKVDGNR IVVRYEDGRL VEYPLRRFYR SNQGTALDQR PRVVVGQRVR
650
651
KGDLLADGPA SENGFLALGQ NVLVAIMPFD GYNFEDAIVI SEELLKRDFY
700
701
TSIHIERYEI EARDTKLGPE RITRDIPHLS EAALRDLDEE GVVRIGAEVK
750
751
PGDILVGRTS FKGESEPTPE ERLLRSIFGE KARDVKDTSL RVPPGEGGIV
800
801
VRTVRLRRGD PGVELKPGVR EVVRVYVAQK RKLQVGDKLA NRHGNKGVVA
850
851
KILPVEDMPH LPDGTPVDVI LNPLGVPSRM NLGQILETHL GLAGYFLGQR
900
901
YISPIFDGAK EPEIKELLAQ AFEVYFGKRK GEGFGVDKRE VEVLRRAEKL
950
951
GLVTPGKTPE EQLKELFLQG KVVLYDGRTG EPIEGPIVVG QMFIMKLYHM
1000
1001
VEDKMHARST GPYSLITQQP LGGKAQFGGQ RFGEMEVWAL EAYGAAHTLQ
1050
1051
EMLTLKSDDI EGRNAAYEAI IKGEDVPEPS VPESFRVLVK ELQALALDVQ
1100
1101
TLDEKDNPVD IFEGLASKR                                  
1119
 

Show the unformatted sequence.

Checksums:
CRC64:C1260F31CEC6B40D
MD5:1fb53497cebed89b3483a457059c0c8e

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
RNA_pol_Rpb2_1 17 - 389 1IW7 C 17 - 389 Jmol AstexViewer SPICE
M 17 - 389 Jmol AstexViewer SPICE
1SMY C 17 - 389 Jmol AstexViewer SPICE
M 17 - 389 Jmol AstexViewer SPICE
1ZYR C 17 - 389 Jmol AstexViewer SPICE
M 17 - 389 Jmol AstexViewer SPICE
2A68 C 17 - 389 Jmol AstexViewer SPICE
M 17 - 389 Jmol AstexViewer SPICE
2A69 C 17 - 389 Jmol AstexViewer SPICE
M 17 - 389 Jmol AstexViewer SPICE
2A6E C 17 - 389 Jmol AstexViewer SPICE
M 17 - 389 Jmol AstexViewer SPICE
2A6H C 17 - 389 Jmol AstexViewer SPICE
M 17 - 389 Jmol AstexViewer SPICE
2BE5 C 17 - 389 Jmol AstexViewer SPICE
M 17 - 389 Jmol AstexViewer SPICE
2CW0 C 17 - 389 Jmol AstexViewer SPICE
M 17 - 389 Jmol AstexViewer SPICE
2O5I C 17 - 389 Jmol AstexViewer SPICE
M 17 - 389 Jmol AstexViewer SPICE
2O5J C 17 - 389 Jmol AstexViewer SPICE
M 17 - 389 Jmol AstexViewer SPICE
2PPB C 17 - 389 Jmol AstexViewer SPICE
M 17 - 389 Jmol AstexViewer SPICE
3AOH C 17 - 389 Jmol AstexViewer SPICE
H 17 - 389 Jmol AstexViewer SPICE
M 17 - 389 Jmol AstexViewer SPICE
3AOI C 17 - 389 Jmol AstexViewer SPICE
H 17 - 389 Jmol AstexViewer SPICE
M 17 - 389 Jmol AstexViewer SPICE
3DXJ C 17 - 389 Jmol AstexViewer SPICE
M 17 - 389 Jmol AstexViewer SPICE
3EQL C 17 - 389 Jmol AstexViewer SPICE
M 17 - 389 Jmol AstexViewer SPICE
RNA_pol_Rpb2_2 142 - 334 1IW7 C 142 - 334 Jmol AstexViewer SPICE
M 142 - 334 Jmol AstexViewer SPICE
1SMY C 142 - 334 Jmol AstexViewer SPICE
M 142 - 334 Jmol AstexViewer SPICE
1ZYR C 142 - 334 Jmol AstexViewer SPICE
M 142 - 334 Jmol AstexViewer SPICE
2A68 C 142 - 334 Jmol AstexViewer SPICE
M 142 - 334 Jmol AstexViewer SPICE
2A69 C 142 - 334 Jmol AstexViewer SPICE
M 142 - 334 Jmol AstexViewer SPICE
2A6E C 142 - 334 Jmol AstexViewer SPICE
M 142 - 334 Jmol AstexViewer SPICE
2A6H C 142 - 334 Jmol AstexViewer SPICE
M 142 - 334 Jmol AstexViewer SPICE
2BE5 C 142 - 334 Jmol AstexViewer SPICE
M 142 - 334 Jmol AstexViewer SPICE
2CW0 C 142 - 334 Jmol AstexViewer SPICE
M 142 - 334 Jmol AstexViewer SPICE
2O5I C 142 - 334 Jmol AstexViewer SPICE
M 142 - 334 Jmol AstexViewer SPICE
2O5J C 142 - 334 Jmol AstexViewer SPICE
M 142 - 334 Jmol AstexViewer SPICE
2PPB C 142 - 334 Jmol AstexViewer SPICE
M 142 - 334 Jmol AstexViewer SPICE
3AOH C 142 - 334 Jmol AstexViewer SPICE
H 142 - 334 Jmol AstexViewer SPICE
M 142 - 334 Jmol AstexViewer SPICE
3AOI C 142 - 334 Jmol AstexViewer SPICE
H 142 - 334 Jmol AstexViewer SPICE
M 142 - 334 Jmol AstexViewer SPICE
3DXJ C 142 - 334 Jmol AstexViewer SPICE
M 142 - 334 Jmol AstexViewer SPICE
3EQL C 142 - 334 Jmol AstexViewer SPICE
M 142 - 334 Jmol AstexViewer SPICE
RNA_pol_Rpb2_3 393 - 462 1IW7 C 393 - 462 Jmol AstexViewer SPICE
M 393 - 462 Jmol AstexViewer SPICE
1SMY C 393 - 462 Jmol AstexViewer SPICE
M 393 - 462 Jmol AstexViewer SPICE
1ZYR C 393 - 462 Jmol AstexViewer SPICE
M 393 - 462 Jmol AstexViewer SPICE
2A68 C 393 - 462 Jmol AstexViewer SPICE
M 393 - 462 Jmol AstexViewer SPICE
2A69 C 393 - 462 Jmol AstexViewer SPICE
M 393 - 462 Jmol AstexViewer SPICE
2A6E C 393 - 462 Jmol AstexViewer SPICE
M 393 - 462 Jmol AstexViewer SPICE
2A6H C 393 - 462 Jmol AstexViewer SPICE
M 393 - 462 Jmol AstexViewer SPICE
2BE5 C 393 - 462 Jmol AstexViewer SPICE
M 393 - 462 Jmol AstexViewer SPICE
2CW0 C 393 - 462 Jmol AstexViewer SPICE
M 393 - 462 Jmol AstexViewer SPICE
2O5I C 393 - 462 Jmol AstexViewer SPICE
M 393 - 462 Jmol AstexViewer SPICE
2O5J C 393 - 462 Jmol AstexViewer SPICE
M 393 - 462 Jmol AstexViewer SPICE
2PPB C 393 - 462 Jmol AstexViewer SPICE
M 393 - 462 Jmol AstexViewer SPICE
3AOH C 393 - 462 Jmol AstexViewer SPICE
H 393 - 462 Jmol AstexViewer SPICE
M 393 - 462 Jmol AstexViewer SPICE
3AOI C 393 - 462 Jmol AstexViewer SPICE
H 393 - 462 Jmol AstexViewer SPICE
M 393 - 462 Jmol AstexViewer SPICE
3DXJ C 393 - 462 Jmol AstexViewer SPICE
M 393 - 462 Jmol AstexViewer SPICE
3EQL C 393 - 462 Jmol AstexViewer SPICE
M 393 - 462 Jmol AstexViewer SPICE
RNA_pol_Rpb2_45 471 - 535 1IW7 C 471 - 535 Jmol AstexViewer SPICE
M 471 - 535 Jmol AstexViewer SPICE
1SMY C 471 - 535 Jmol AstexViewer SPICE
M 471 - 535 Jmol AstexViewer SPICE
1ZYR C 471 - 535 Jmol AstexViewer SPICE
M 471 - 535 Jmol AstexViewer SPICE
2A68 C 471 - 535 Jmol AstexViewer SPICE
M 471 - 535 Jmol AstexViewer SPICE
2A69 C 471 - 535 Jmol AstexViewer SPICE
M 471 - 535 Jmol AstexViewer SPICE
2A6E C 471 - 535 Jmol AstexViewer SPICE
M 471 - 535 Jmol AstexViewer SPICE
2A6H C 471 - 535 Jmol AstexViewer SPICE
M 471 - 535 Jmol AstexViewer SPICE
2BE5 C 471 - 535 Jmol AstexViewer SPICE
M 471 - 535 Jmol AstexViewer SPICE
2CW0 C 471 - 535 Jmol AstexViewer SPICE
M 471 - 535 Jmol AstexViewer SPICE
2O5I C 471 - 535 Jmol AstexViewer SPICE
M 471 - 535 Jmol AstexViewer SPICE
2O5J C 471 - 535 Jmol AstexViewer SPICE
M 471 - 535 Jmol AstexViewer SPICE
2PPB C 471 - 535 Jmol AstexViewer SPICE
M 471 - 535 Jmol AstexViewer SPICE
3AOH C 471 - 535 Jmol AstexViewer SPICE
H 471 - 535 Jmol AstexViewer SPICE
M 471 - 535 Jmol AstexViewer SPICE
3AOI C 471 - 535 Jmol AstexViewer SPICE
H 471 - 535 Jmol AstexViewer SPICE
M 471 - 535 Jmol AstexViewer SPICE
3DXJ C 471 - 535 Jmol AstexViewer SPICE
M 471 - 535 Jmol AstexViewer SPICE
3EQL C 471 - 535 Jmol AstexViewer SPICE
M 471 - 535 Jmol AstexViewer SPICE
RNA_pol_Rpb2_6 541 - 1026 1IW7 C 541 - 1026 Jmol AstexViewer SPICE
M 541 - 1026 Jmol AstexViewer SPICE
1SMY C 541 - 1026 Jmol AstexViewer SPICE
M 541 - 1026 Jmol AstexViewer SPICE
1ZYR C 541 - 1026 Jmol AstexViewer SPICE
M 541 - 1026 Jmol AstexViewer SPICE
2A68 C 541 - 1026 Jmol AstexViewer SPICE
M 541 - 1026 Jmol AstexViewer SPICE
2A69 C 541 - 1026 Jmol AstexViewer SPICE
M 541 - 1026 Jmol AstexViewer SPICE
2A6E C 541 - 1026 Jmol AstexViewer SPICE
M 541 - 1026 Jmol AstexViewer SPICE
2A6H C 541 - 1026 Jmol AstexViewer SPICE
M 541 - 1026 Jmol AstexViewer SPICE
2BE5 C 541 - 1026 Jmol AstexViewer SPICE
M 541 - 1026 Jmol AstexViewer SPICE
2CW0 C 541 - 1026 Jmol AstexViewer SPICE
M 541 - 1026 Jmol AstexViewer SPICE
2O5I C 541 - 1026 Jmol AstexViewer SPICE
M 541 - 1026 Jmol AstexViewer SPICE
2O5J C 541 - 1026 Jmol AstexViewer SPICE
M 541 - 1026 Jmol AstexViewer SPICE
2PPB C 541 - 1026 Jmol AstexViewer SPICE
M 541 - 1026 Jmol AstexViewer SPICE
3AOH C 541 - 1026 Jmol AstexViewer SPICE
H 541 - 1026 Jmol AstexViewer SPICE
M 541 - 1026 Jmol AstexViewer SPICE
3AOI C 541 - 1026 Jmol AstexViewer SPICE
H 541 - 1026 Jmol AstexViewer SPICE
M 541 - 1026 Jmol AstexViewer SPICE
3DXJ C 541 - 1026 Jmol AstexViewer SPICE
M 541 - 1026 Jmol AstexViewer SPICE
3EQL C 541 - 1026 Jmol AstexViewer SPICE
M 541 - 1026 Jmol AstexViewer SPICE
RNA_pol_Rpb2_7 1028 - 1104 1IW7 C 1028 - 1104 Jmol AstexViewer SPICE
M 1028 - 1104 Jmol AstexViewer SPICE
1SMY C 1028 - 1104 Jmol AstexViewer SPICE
M 1028 - 1104 Jmol AstexViewer SPICE
1ZYR C 1028 - 1104 Jmol AstexViewer SPICE
M 1028 - 1104 Jmol AstexViewer SPICE
2A68 C 1028 - 1104 Jmol AstexViewer SPICE
M 1028 - 1104 Jmol AstexViewer SPICE
2A69 C 1028 - 1104 Jmol AstexViewer SPICE
M 1028 - 1104 Jmol AstexViewer SPICE
2A6E C 1028 - 1104 Jmol AstexViewer SPICE
M 1028 - 1104 Jmol AstexViewer SPICE
2A6H C 1028 - 1104 Jmol AstexViewer SPICE
M 1028 - 1104 Jmol AstexViewer SPICE
2BE5 C 1028 - 1104 Jmol AstexViewer SPICE
M 1028 - 1104 Jmol AstexViewer SPICE
2CW0 C 1028 - 1104 Jmol AstexViewer SPICE
M 1028 - 1104 Jmol AstexViewer SPICE
2O5I C 1028 - 1104 Jmol AstexViewer SPICE
M 1028 - 1104 Jmol AstexViewer SPICE
2O5J C 1028 - 1104 Jmol AstexViewer SPICE
M 1028 - 1104 Jmol AstexViewer SPICE
2PPB C 1028 - 1104 Jmol AstexViewer SPICE
M 1028 - 1104 Jmol AstexViewer SPICE
3AOH C 1028 - 1104 Jmol AstexViewer SPICE
H 1028 - 1104 Jmol AstexViewer SPICE
M 1028 - 1104 Jmol AstexViewer SPICE
3AOI C 1028 - 1104 Jmol AstexViewer SPICE
H 1028 - 1104 Jmol AstexViewer SPICE
M 1028 - 1104 Jmol AstexViewer SPICE
3DXJ C 1028 - 1104 Jmol AstexViewer SPICE
M 1028 - 1104 Jmol AstexViewer SPICE
3EQL C 1028 - 1104 Jmol AstexViewer SPICE
M 1028 - 1104 Jmol AstexViewer SPICE