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1  structure 1  species 0  interactions 1  sequence 1  architecture

Protein: DDL_YERPE (Q8ZIE7)

Summary

This is the summary of UniProt entry DDL_YERPE (Q8ZIE7).

Description: D-alanine--D-alanine ligase EC=6.3.2.4
Source organism: Yersinia pestis (NCBI taxonomy ID 632)
View Pfam proteome data.
Length: 306 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A Dala_Dala_lig_N 3 86
Pfam A Dala_Dala_lig_C 103 303
disorder n/a 154 155
low_complexity n/a 235 244

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q8ZIE7. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MAEKVAVLLG GTSAEREVSL LSGQAVLAGL KEAGIDAYGV DTKDFPVTQL
50
51
KEQGFDKVFI ALHGRGGEDG TLQGVLEFLQ LPYTGSGVMA SALTMDKLRT
100
101
KLVWQALGLP ISPYVALNRQ QFETLSPEEL VACVAKLGLP LIVKPSHEGS
150
151
SVGMSKVDHA SELQKALVEA FQHDSDVLIE KWLSGPEFTV AILGDEVLPS
200
201
IRIQPPGVFY DYDAKYLSDK TQYFCPSGLS DESEQQLAAL ALQAYHALDC
250
251
SGWGRVDVMQ DRDGHFYLLE VNTSPGMTSH SLVPMAARQY GLSFSQLVAR
300
301
ILMLAD                                                
306
 

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Checksums:
CRC64:C78CFF3D2E11F846
MD5:e77f27c48517e610b44ee7374fded134

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
Dala_Dala_lig_C 103 - 303 3V4Z A 103 - 303 Jmol AstexViewer SPICE
B 103 - 303 Jmol AstexViewer SPICE
Dala_Dala_lig_N 3 - 86 3V4Z A 3 - 86 Jmol AstexViewer SPICE
B 3 - 86 Jmol AstexViewer SPICE