Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
2  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: PF21A_HUMAN (Q96BD5)

Summary

This is the summary of UniProt entry PF21A_HUMAN (Q96BD5).

Description: PHD finger protein 21A
Source organism: Homo sapiens (Human) (NCBI taxonomy ID 9606)
View Pfam proteome data.
Length: 680 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam B Pfam-B_7050 1 349
disorder n/a 23 40
coiled_coil n/a 30 57
disorder n/a 58 60
disorder n/a 69 124
low_complexity n/a 84 112
disorder n/a 149 150
disorder n/a 154 156
disorder n/a 170 187
disorder n/a 189 192
disorder n/a 211 222
disorder n/a 224 262
low_complexity n/a 240 261
disorder n/a 265 289
disorder n/a 291 293
disorder n/a 307 371
disorder n/a 377 405
disorder n/a 411 482
Pfam A AT_hook 425 436
Pfam A PHD 490 535
Pfam B Pfam-B_15568 536 649
low_complexity n/a 559 571
coiled_coil n/a 562 600
disorder n/a 569 575
disorder n/a 581 585
disorder n/a 608 609
disorder n/a 636 637
disorder n/a 639 678
low_complexity n/a 650 671

Show or hide domain scores.

Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

Note: it can take a few seconds for this image to be generated and loaded.

Loading feature alignment...

Show sources update panel.

Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q96BD5. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MELQTLQEAL KVEIQVHQKL VAQMKQDPQN ADLKKQLHEL QAKITALSEK
50
51
QKRVVEQLRK NLIVKQEQPD KFQIQPLPQS ENKLQTAQQQ PLQQLQQQQQ
100
101
YHHHHAQQSA AASPNLTASQ KTVTTASMIT TKTLPLVLKA ATATMPASVV
150
151
GQRPTIAMVT AINSQKAVLS TDVQNTPVNL QTSSKVTGPG AEAVQIVAKN
200
201
TVTLVQATPP QPIKVPQFIP PPRLTPRPNF LPQVRPKPVA QNNIPIAPAP
250
251
PPMLAAPQLI QRPVMLTKFT PTTLPTSQNS IHPVRVVNGQ TATIAKTFPM
300
301
AQLTSIVIAT PGTRLAGPQT VQLSKPSLEK QTVKSHTETD EKQTESRTIT
350
351
PPAAPKPKRE ENPQKLAFMV SLGLVTHDHL EEIQSKRQER KRRTTANPVY
400
401
SGAVFEPERK KSAVTYLNST MHPGTRKRGR PPKYNAVLGF GALTPTSPQS
450
451
SHPDSPENEK TETTFTFPAP VQPVSLPSPT STDGDIHEDF CSVCRKSGQL
500
501
LMCDTCSRVY HLDCLDPPLK TIPKGMWICP RCQDQMLKKE EAIPWPGTLA
550
551
IVHSYIAYKA AKEEEKQKLL KWSSDLKQER EQLEQKVKQL SNSISKCMEM
600
601
KNTILARQKE MHSSLEKVKQ LIRLIHGIDL SKPVDSEATV GAISNGPDCT
650
651
PPANAATSTP APSPSSQSCT ANCNQGEETK                      
680
 

Show the unformatted sequence.

Checksums:
CRC64:C7AF87EB2984A796
MD5:c88f19456df9b5384b31bf498087afcc

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
PHD 490 - 535 2PUY A 490 - 535 Jmol AstexViewer SPICE
B 490 - 535 Jmol AstexViewer SPICE
2YQL A 11 - 56 Jmol AstexViewer SPICE