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4  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: TR13C_HUMAN (Q96RJ3)

Summary

This is the summary of UniProt entry TR13C_HUMAN (Q96RJ3).

Description: Tumor necrosis factor receptor superfamily member 13C
Source organism: Homo sapiens (Human) (NCBI taxonomy ID 9606)
View Pfam proteome data.
Length: 184 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
disorder n/a 1 13
Pfam A BaffR-Tall_bind 16 46
disorder n/a 43 67
low_complexity n/a 63 99
transmembrane n/a 77 99
low_complexity n/a 102 109
disorder n/a 106 133
disorder n/a 138 184
low_complexity n/a 146 158

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q96RJ3. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MRRGPRSLRG RDAPAPTPCV PAECFDLLVR HCVACGLLRT PRPKPAGASS
50
51
PAPRTALQPQ ESVGAGAGEA ALPLPGLLFG APALLGLALV LALVLVGLVS
100
101
WRRRQRRLRG ASSAEAPDGD KDAPEPLDKV IILSPGISDA TAPAWPPPGE
150
151
DPGTTPPGHS VPVPATELGS TELVTTKTAG PEQQ                 
184
 

Show the unformatted sequence.

Checksums:
CRC64:F2BFB98099A27138
MD5:3147b3a492086063c4097ade9a47e1dc

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
BaffR-Tall_bind 16 - 39 1OQE N 1 - 24 Jmol AstexViewer SPICE
2HFG R 16 - 39 Jmol AstexViewer SPICE
16 - 46 1OQE K 1 - 31 Jmol AstexViewer SPICE
L 1 - 31 Jmol AstexViewer SPICE
M 1 - 31 Jmol AstexViewer SPICE
O 1 - 31 Jmol AstexViewer SPICE
P 1 - 31 Jmol AstexViewer SPICE
Q 1 - 31 Jmol AstexViewer SPICE
R 1 - 31 Jmol AstexViewer SPICE
17 - 41 1P0T n/a 17 - 41 Jmol AstexViewer SPICE
1 17 - 41 Jmol AstexViewer SPICE
2 17 - 41 Jmol AstexViewer SPICE
3 17 - 41 Jmol AstexViewer SPICE
4 17 - 41 Jmol AstexViewer SPICE
5 17 - 41 Jmol AstexViewer SPICE
6 17 - 41 Jmol AstexViewer SPICE
7 17 - 41 Jmol AstexViewer SPICE
8 17 - 41 Jmol AstexViewer SPICE
9 17 - 41 Jmol AstexViewer SPICE
a 17 - 41 Jmol AstexViewer SPICE
A 17 - 41 Jmol AstexViewer SPICE
B 17 - 41 Jmol AstexViewer SPICE
b 17 - 41 Jmol AstexViewer SPICE
c 17 - 41 Jmol AstexViewer SPICE
C 17 - 41 Jmol AstexViewer SPICE
d 17 - 41 Jmol AstexViewer SPICE
D 17 - 41 Jmol AstexViewer SPICE
E 17 - 41 Jmol AstexViewer SPICE
e 17 - 41 Jmol AstexViewer SPICE
F 17 - 41 Jmol AstexViewer SPICE
f 17 - 41 Jmol AstexViewer SPICE
g 17 - 41 Jmol AstexViewer SPICE
G 17 - 41 Jmol AstexViewer SPICE
H 17 - 41 Jmol AstexViewer SPICE
h 17 - 41 Jmol AstexViewer SPICE
I 17 - 41 Jmol AstexViewer SPICE
i 17 - 41 Jmol AstexViewer SPICE
j 17 - 41 Jmol AstexViewer SPICE
J 17 - 41 Jmol AstexViewer SPICE
K 17 - 41 Jmol AstexViewer SPICE
k 17 - 41 Jmol AstexViewer SPICE
L 17 - 41 Jmol AstexViewer SPICE
l 17 - 41 Jmol AstexViewer SPICE
M 17 - 41 Jmol AstexViewer SPICE
m 17 - 41 Jmol AstexViewer SPICE
N 17 - 41 Jmol AstexViewer SPICE
n 17 - 41 Jmol AstexViewer SPICE
O 17 - 41 Jmol AstexViewer SPICE
o 17 - 41 Jmol AstexViewer SPICE
P 17 - 41 Jmol AstexViewer SPICE
p 17 - 41 Jmol AstexViewer SPICE
q 17 - 41 Jmol AstexViewer SPICE
Q 17 - 41 Jmol AstexViewer SPICE
r 17 - 41 Jmol AstexViewer SPICE
R 17 - 41 Jmol AstexViewer SPICE
S 17 - 41 Jmol AstexViewer SPICE
s 17 - 41 Jmol AstexViewer SPICE
T 17 - 41 Jmol AstexViewer SPICE
t 17 - 41 Jmol AstexViewer SPICE
u 17 - 41 Jmol AstexViewer SPICE
U 17 - 41 Jmol AstexViewer SPICE
v 17 - 41 Jmol AstexViewer SPICE
V 17 - 41 Jmol AstexViewer SPICE
W 17 - 41 Jmol AstexViewer SPICE
w 17 - 41 Jmol AstexViewer SPICE
x 17 - 41 Jmol AstexViewer SPICE
X 17 - 41 Jmol AstexViewer SPICE
Y 17 - 41 Jmol AstexViewer SPICE
Z 17 - 41 Jmol AstexViewer SPICE
17 - 42 1OSX A 17 - 42 Jmol AstexViewer SPICE

TreeFam

Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.