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2  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RPOA1_SULSO (Q980R2)

Summary

This is the summary of UniProt entry RPOA1_SULSO (Q980R2).

Description: DNA-directed RNA polymerase subunit A' EC=2.7.7.6
Source organism: Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (NCBI taxonomy ID 273057)
View Pfam proteome data.
Length: 880 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A RNA_pol_Rpb1_1 3 313
disorder n/a 44 45
disorder n/a 285 290
disorder n/a 292 297
Pfam A RNA_pol_Rpb1_2 315 482
Pfam A RNA_pol_Rpb1_3 485 651
low_complexity n/a 508 518
coiled_coil n/a 658 685
Pfam A RNA_pol_Rpb1_4 676 782
Pfam A RNA_pol_Rpb1_5 789 869

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q980R2. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MSEKNIKGIK FGILSPDEIR KMSVTAIITP DVYDEDGTPI EGSVMDPRLG
50
51
VIEPGQKCPT CGNTLGNCPG HFGHIELVRP VIHVGLVKHI YEFLKATCRR
100
101
CGRVKISEDE IEKYSRIYNA IKKRWPSAAR RLTEYVKKTA MKAQVCPHCN
150
151
EKQYKIKLEK PYNFYEERKE GVAKLTPSDI RERLEKIPDS DVEILGYDPT
200
201
TSRPEWMILT VLPVPPITIR PSIMIESGIR AEDDLTHKLV DIVRINERLK
250
251
ESIDAGAPQL IIEDLWDLLQ YHVATYFDNE IPGLPPSKHR SGRPLRTLAQ
300
301
RLKGKEGRFR GNLSGKRVDF SSRTVISPDP NISIDEVGVP EIIAKTLTVP
350
351
ERITPWNIEK LRQFVINGPD KWPGANYVIR PDGRRIDLRY VKDRKELAST
400
401
LAPGYIIERH LIDGDIVLFN RQPSLHRISM MAHRVRVLKG LTFRLNLLVC
450
451
PPYNADFDGD EMNLHVPQSE EAIAEAKEIM LVHKNIITPR YGGPIIGAAQ
500
501
DYISGAYLLT VKTTLLTKEE AQQILGVADV KIDLGEPAIL APREYYTGKQ
550
551
VISAFLPKDF NFHGQANVSS GPRLCKNEDC PHDSYVVIKN GILLEGVFDK
600
601
KAIGNQQPES ILHWLIKEYS DEYGKWLMDN LFRVFIRFVE LQGFTMRLED
650
651
VSLGDDVKKE IYNEIDRAKV EVDNLIQKYK NGELEPIPGR TLEESLENYI
700
701
LDTLDKLRST AGDIASKYLD PFNFAYVMAR TGARGSVLNI TQMAAMLGQQ
750
751
SVRGERIKRG YMTRTLPHFK PYDISPEARG FIYSSFRTGL KPTELFFHAA
800
801
GGREGLVDTA VRTSQSGYMQ RRLINALSDL RAEYDGTVRS LYGEVVQVAY
850
851
GDDGVFPMYS AHGKTVDVNR IFERVVGWKA                      
880
 

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Checksums:
CRC64:5C8AE20EFC71DE25
MD5:d2abe1c6edbb3f1219427160bf46e086

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
RNA_pol_Rpb1_1 4 - 313 2PMZ A 4 - 313 Jmol AstexViewer SPICE
Q 4 - 313 Jmol AstexViewer SPICE
3HKZ A 4 - 313 Jmol AstexViewer SPICE
I 4 - 313 Jmol AstexViewer SPICE
RNA_pol_Rpb1_2 315 - 482 2PMZ A 315 - 482 Jmol AstexViewer SPICE
Q 315 - 482 Jmol AstexViewer SPICE
3HKZ A 315 - 482 Jmol AstexViewer SPICE
I 315 - 482 Jmol AstexViewer SPICE
RNA_pol_Rpb1_3 485 - 651 2PMZ A 485 - 651 Jmol AstexViewer SPICE
Q 485 - 651 Jmol AstexViewer SPICE
3HKZ A 485 - 651 Jmol AstexViewer SPICE
I 485 - 651 Jmol AstexViewer SPICE
RNA_pol_Rpb1_4 676 - 782 2PMZ A 676 - 782 Jmol AstexViewer SPICE
Q 676 - 782 Jmol AstexViewer SPICE
3HKZ A 676 - 782 Jmol AstexViewer SPICE
I 676 - 782 Jmol AstexViewer SPICE
RNA_pol_Rpb1_5 789 - 869 2PMZ A 789 - 869 Jmol AstexViewer SPICE
Q 789 - 869 Jmol AstexViewer SPICE
3HKZ A 789 - 869 Jmol AstexViewer SPICE
I 789 - 869 Jmol AstexViewer SPICE