Summary
This is the summary of UniProt entry CAPSD_PAV (Q9J7Z0).
| Description: | Capsid protein alpha EC=3.4.23.44 |
| Source organism: |
Pariacoto virus (PaV)
(NCBI taxonomy ID
103782)
|
| Length: | 401 amino acids |
Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.
Pfam domains
| Source | Domain | Start | End |
|---|---|---|---|
| disorder | n/a | 1 | 48 |
| sig_p | n/a | 1 | 28 |
| Pfam A | Peptidase_A6 | 43 | 401 |
| low_complexity | n/a | 275 | 295 |
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Sequence annotations
This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...
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Sequence information
This is the amino acid sequence of the UniProt sequence database entry with the accession Q9J7Z0. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.
| Sequence: | 1
MVSRTKNRRN KARKVVSRST ALVPMAPASQ RTGPAPRKPR KRNQALVRNP
50 51
RLTDAGLAFL KCAFAAPDFS VDPGKGIPDN FHGRTLAIKD CNTTSVVFTP
100 101
NTDTYIVVAP VPGFAYFRAE VAVGAQPTTF VGVPYPTYAT NFGAGSQNGL
150 151
PAVNNYSKFR YASMACGLYP TSNMMQFSGS VQVWRVDLNL SEAVNPAVTA
200 201
ITPAPGVFAN FVDKRINGLR GIRPLAPRDN YSGNFIDGAY TFAFDKSTDF
250 251
EWCDFVRSLE FSESNVLGAA TAMKLLAPGG GTDTTLTGLG NVNTLVYKIS
300 301
TPTGAVNTAI LRTWNCIELQ PYTDSALFQF SGVSPPFDPL ALECYHNLKM
350 351
RFPVAVSSRE NSKFWEGVLR VLNQISGTLS VIPGPVGTIS AGVHQLTGMY
400 401
M
401
Show the unformatted sequence. |
| Checksums: |
CRC64:1E518977DE7A2C90
MD5:f317a8ec3bbb19e0f43c90c919038a0e
|
Structures
For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.
| Pfam family | UniProt residues | PDB ID | PDB chain ID | PDB residues | View |
|---|---|---|---|---|---|
| Peptidase_A6 | 362 - 383 | 1F8V | E | 362 - 383 | Jmol AstexViewer SPICE |
| F | 362 - 383 | Jmol AstexViewer SPICE | |||
| 362 - 401 | 1F8V | D | 362 - 401 | Jmol AstexViewer SPICE | |
| 43 - 361 | 1F8V | A | 43 - 361 | Jmol AstexViewer SPICE | |
| 49 - 361 | 1F8V | B | 49 - 361 | Jmol AstexViewer SPICE | |
| 51 - 361 | 1F8V | C | 51 - 361 | Jmol AstexViewer SPICE |