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1  structure 1  species 0  interactions 1  sequence 1  architecture

Protein: RPOB_VIBCH (Q9KV30)

Summary

This is the summary of UniProt entry RPOB_VIBCH (Q9KV30).

Description: DNA-directed RNA polymerase subunit beta EC=2.7.7.6
Source organism: Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (NCBI taxonomy ID 243277)
View Pfam proteome data.
Length: 1341 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A RNA_pol_Rpb2_1 26 509
Pfam A RNA_pol_Rpb2_2 151 278
Pfam A RNA_pol_Rpb2_2 315 454
disorder n/a 411 413
Pfam A RNA_pol_Rpb2_3 513 582
disorder n/a 517 518
disorder n/a 525 526
Pfam A RNA_pol_Rpb2_45 591 656
disorder n/a 634 638
disorder n/a 640 641
disorder n/a 645 649
disorder n/a 681 685
disorder n/a 691 692
disorder n/a 694 696
Pfam A RNA_pol_Rpb2_6 715 1263
disorder n/a 764 765
disorder n/a 767 770
disorder n/a 776 779
disorder n/a 781 783
disorder n/a 888 889
coiled_coil n/a 936 963
coiled_coil n/a 997 1031
low_complexity n/a 998 1017
disorder n/a 1070 1075
disorder n/a 1078 1084
disorder n/a 1089 1091
disorder n/a 1162 1163
Pfam A RNA_pol_Rpb2_7 1265 1341
disorder n/a 1308 1310

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q9KV30. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MVYSYTEKKR IRKDFGTRPQ VLDIPYLLSI QLDSFEKFIE QDPEGQYGLE
50
51
AAFRSVFPIQ SYNGNSELQY VSYRLGEPVF DVKECQIRGV TYSKPLRVKL
100
101
RLVIFDKDAP AGTVKDIKEQ EVYMGEIPLM TENGTFVING TERVIVSQLH
150
151
RSPGVFFDSD KGKTHSSGKV LYNARIIPYR GSWLDFEFDP KDNLYVRIDR
200
201
RRKLPASIIL RALGKTSAEI LDIFFEKVNF EVKDQTLMME LVPERLRGET
250
251
ATFDIEADGK VYVEKGRRVT ARHIRQLEKD GVNFIEVPVE YIVGKVSAKD
300
301
YVNEATGELI ITANQEISLE ALANLSQAGY KKLEVLFTND LDHGPFMSET
350
351
LRVDSTTDRI SALVEIYRMM RPGEPPTKEA AESLFESLFF SAERYDLSTV
400
401
GRMKFNSSIG REDAEEQGTL DEVDIIEVMK KLISIRNGKG EVDDIDHLGN
450
451
RRIRSVGEMA ENQFRVGLVR VERAVKERLS LGDLDNVMPQ DLINAKPISA
500
501
AVKEFFGSSQ LSQFMDQNNP LSEVTHKRRI SALGPGGLTR ERAGFEVRDV
550
551
HVTHYGRLCP IETPEGPNIG LINSLSAFAR CNEYGFLETP YRRVVNGVVT
600
601
DEVDYLSAIE EGQFVIAQAN AKLTEEGGFA DELVTARQKG ESGLHPREHV
650
651
DYMDVATNQV VSIAASLIPF LEHDDANRAL MGANMQRQAV PTLRSEKPLV
700
701
GTGIERNVAV DSGVTAVAKR GGVIQSVDAS RIVVKVNEEE LIPGEAGIDI
750
751
YNLTKYTRSN QNTCINQRPC VMPGEPVARG DVLADGPSTD LGELALGQNM
800
801
RIAFMPWNGY NFEDSILVSE RVVQDDRFTT IHIQELSCVA RDTKLGAEEI
850
851
TADIPNVGEA ALSKLDESGI VYIGAEVKGG DILVGKVTPK GETQLTPEEK
900
901
LLRAIFGEKA SDVKDTSLRV PNSVAGTVID VQVFTRDGVE KDKRALEIEQ
950
951
MQLKEAKKDL TEEFQILEGG LLARVRSVLL AGGYTEAKLG SIERKKWLEQ
1000
1001
TLENEELQNQ LEQLAEQYDE LKADFDKKFE AKRRKITQGD DLAPGVLKIV
1050
1051
KVYLAVKRRI QPGDKMAGRH GNKGVISKIN PVEDMPYDEN GQPVDIVLNP
1100
1101
LGVPSRMNIG QILEVHLGLA AKGIGDKINQ MIKEQQELAK LREFLQKVYD
1150
1151
LGDTRQRVDI SELSDEDVRT LAHNLRAGLP VATPVFDGAP ESSIKAMLEL
1200
1201
ADLPASGQLT LFDGRTGDAF ERPVTVGYMY MLKLNHLVDD KMHARSTGSY
1250
1251
SLVTQQPLGG KAQFGGQRFG EMEVWALEAY GAAYTLQEML TVKSDDVNGR
1300
1301
TKMYKNIVDG NHAMEPGMPE SFNVLLKEIR SLGINIELED E         
1341
 

Show the unformatted sequence.

Checksums:
CRC64:9C6C824A923295A9
MD5:3a67fa44d6f91b7fb8855108e82138bc

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
RNA_pol_Rpb2_1 228 - 327 3E7H B 1 - 100 Jmol AstexViewer SPICE
228 - 328 3E7H A 1 - 101 Jmol AstexViewer SPICE
RNA_pol_Rpb2_2 228 - 278 3E7H A 1 - 51 Jmol AstexViewer SPICE
B 1 - 51 Jmol AstexViewer SPICE
315 - 327 3E7H B 88 - 100 Jmol AstexViewer SPICE
315 - 328 3E7H A 88 - 101 Jmol AstexViewer SPICE