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2  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: FKB42_ARATH (Q9LDC0)

Summary

This is the summary of UniProt entry FKB42_ARATH (Q9LDC0).

Description: Peptidyl-prolyl cis-trans isomerase FKBP42 EC=5.2.1.8
Source organism: Arabidopsis thaliana (Mouse-ear cress) (NCBI taxonomy ID 3702)
View Pfam proteome data.
Length: 365 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
disorder n/a 1 44
disorder n/a 47 48
disorder n/a 50 55
disorder n/a 57 58
Pfam A FKBP_C 61 156
disorder n/a 85 86
disorder n/a 88 92
disorder n/a 96 97
disorder n/a 169 173
disorder n/a 176 177
Pfam A TPR_11 178 261
Pfam A TPR_11 244 295
coiled_coil n/a 301 321
transmembrane n/a 339 357

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q9LDC0. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MDESLEHQTQ THDQESEIVT EGSAVVHSEP SQEGNVPPKV DSEAEVLDEK
50
51
VSKQIIKEGH GSKPSKYSTC FLHYRAWTKN SQHKFEDTWH EQQPIELVLG
100
101
KEKKELAGLA IGVASMKSGE RALVHVGWEL AYGKEGNFSF PNVPPMADLL
150
151
YEVEVIGFDE TKEGKARSDM TVEERIGAAD RRKMDGNSLF KEEKLEEAMQ
200
201
QYEMAIAYMG DDFMFQLYGK YQDMALAVKN PCHLNIAACL IKLKRYDEAI
250
251
GHCNIVLTEE EKNPKALFRR GKAKAELGQM DSARDDFRKA QKYAPDDKAI
300
301
RRELRALAEQ EKALYQKQKE MYKGIFKGKD EGGAKSKSLF WLIVLWQWFV
350
351
SLFSRIFRRH RVKAD                                      
365
 

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Checksums:
CRC64:C939B75EEC79EA87
MD5:02feb9ea29609e0e7f11b2c6adfadab9

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
FKBP_C 61 - 156 2F4E A 61 - 156 Jmol AstexViewer SPICE
B 61 - 156 Jmol AstexViewer SPICE
2IF4 A 61 - 156 Jmol AstexViewer SPICE
TPR_11 178 - 261 2IF4 A 178 - 261 Jmol AstexViewer SPICE
244 - 292 2IF4 A 244 - 292 Jmol AstexViewer SPICE