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8  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: TN13B_HUMAN (Q9Y275)

Summary

This is the summary of UniProt entry TN13B_HUMAN (Q9Y275).

Description: Tumor necrosis factor ligand superfamily member 13B
Source organism: Homo sapiens (Human) (NCBI taxonomy ID 9606)
View Pfam proteome data.
Length: 285 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam B Pfam-B_14337 1 159
disorder n/a 1 4
disorder n/a 6 13
disorder n/a 40 42
transmembrane n/a 47 70
low_complexity n/a 47 65
coiled_coil n/a 69 89
disorder n/a 87 100
low_complexity n/a 88 107
disorder n/a 113 114
disorder n/a 116 137
Pfam A TNF 168 284

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q9Y275. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MDDSTEREQS RLTSCLKKRE EMKLKECVSI LPRKESPSVR SSKDGKLLAA
50
51
TLLLALLSCC LTVVSFYQVA ALQGDLASLR AELQGHHAEK LPAGAGAPKA
100
101
GLEEAPAVTA GLKIFEPPAP GEGNSSQNSR NKRAVQGPEE TVTQDCLQLI
150
151
ADSETPTIQK GSYTFVPWLL SFKRGSALEE KENKILVKET GYFFIYGQVL
200
201
YTDKTYAMGH LIQRKKVHVF GDELSLVTLF RCIQNMPETL PNNSCYSAGI
250
251
AKLEEGDELQ LAIPRENAQI SLDGDVTFFG ALKLL                
285
 

Show the unformatted sequence.

Checksums:
CRC64:48ED0D7AB38C8867
MD5:2a724d1008c83027f5cfc3066ed860cd

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
TNF 168 - 284 1JH5 A 27 - 143 Jmol AstexViewer SPICE
B 27 - 143 Jmol AstexViewer SPICE
C 27 - 143 Jmol AstexViewer SPICE
D 27 - 143 Jmol AstexViewer SPICE
E 27 - 143 Jmol AstexViewer SPICE
F 27 - 143 Jmol AstexViewer SPICE
G 27 - 143 Jmol AstexViewer SPICE
H 27 - 143 Jmol AstexViewer SPICE
I 27 - 143 Jmol AstexViewer SPICE
J 27 - 143 Jmol AstexViewer SPICE
1KD7 A 168 - 284 Jmol AstexViewer SPICE
B 168 - 284 Jmol AstexViewer SPICE
C 168 - 284 Jmol AstexViewer SPICE
K 168 - 284 Jmol AstexViewer SPICE
L 168 - 284 Jmol AstexViewer SPICE
M 168 - 284 Jmol AstexViewer SPICE
1KXG A 168 - 284 Jmol AstexViewer SPICE
B 168 - 284 Jmol AstexViewer SPICE
C 168 - 284 Jmol AstexViewer SPICE
D 168 - 284 Jmol AstexViewer SPICE
E 168 - 284 Jmol AstexViewer SPICE
F 168 - 284 Jmol AstexViewer SPICE
1OQD A 27 - 143 Jmol AstexViewer SPICE
B 27 - 143 Jmol AstexViewer SPICE
C 27 - 143 Jmol AstexViewer SPICE
D 27 - 143 Jmol AstexViewer SPICE
E 27 - 143 Jmol AstexViewer SPICE
F 27 - 143 Jmol AstexViewer SPICE
G 27 - 143 Jmol AstexViewer SPICE
H 27 - 143 Jmol AstexViewer SPICE
I 27 - 143 Jmol AstexViewer SPICE
J 27 - 143 Jmol AstexViewer SPICE
1OQE A 27 - 143 Jmol AstexViewer SPICE
B 27 - 143 Jmol AstexViewer SPICE
C 27 - 143 Jmol AstexViewer SPICE
D 27 - 143 Jmol AstexViewer SPICE
E 27 - 143 Jmol AstexViewer SPICE
F 27 - 143 Jmol AstexViewer SPICE
G 27 - 143 Jmol AstexViewer SPICE
H 27 - 143 Jmol AstexViewer SPICE
I 27 - 143 Jmol AstexViewer SPICE
J 27 - 143 Jmol AstexViewer SPICE
1OSG A 168 - 284 Jmol AstexViewer SPICE
B 168 - 284 Jmol AstexViewer SPICE
C 168 - 284 Jmol AstexViewer SPICE
D 168 - 284 Jmol AstexViewer SPICE
E 168 - 284 Jmol AstexViewer SPICE
F 168 - 284 Jmol AstexViewer SPICE
1OTZ n/a 168 - 284 Jmol AstexViewer SPICE
1 168 - 284 Jmol AstexViewer SPICE
2 168 - 284 Jmol AstexViewer SPICE
3 168 - 284 Jmol AstexViewer SPICE
4 168 - 284 Jmol AstexViewer SPICE
5 168 - 284 Jmol AstexViewer SPICE
6 168 - 284 Jmol AstexViewer SPICE
7 168 - 284 Jmol AstexViewer SPICE
8 168 - 284 Jmol AstexViewer SPICE
9 168 - 284 Jmol AstexViewer SPICE
a 168 - 284 Jmol AstexViewer SPICE
A 168 - 284 Jmol AstexViewer SPICE
B 168 - 284 Jmol AstexViewer SPICE
b 168 - 284 Jmol AstexViewer SPICE
c 168 - 284 Jmol AstexViewer SPICE
C 168 - 284 Jmol AstexViewer SPICE
d 168 - 284 Jmol AstexViewer SPICE
D 168 - 284 Jmol AstexViewer SPICE
E 168 - 284 Jmol AstexViewer SPICE
e 168 - 284 Jmol AstexViewer SPICE
F 168 - 284 Jmol AstexViewer SPICE
f 168 - 284 Jmol AstexViewer SPICE
g 168 - 284 Jmol AstexViewer SPICE
G 168 - 284 Jmol AstexViewer SPICE
H 168 - 284 Jmol AstexViewer SPICE
h 168 - 284 Jmol AstexViewer SPICE
I 168 - 284 Jmol AstexViewer SPICE
i 168 - 284 Jmol AstexViewer SPICE
j 168 - 284 Jmol AstexViewer SPICE
J 168 - 284 Jmol AstexViewer SPICE
K 168 - 284 Jmol AstexViewer SPICE
k 168 - 284 Jmol AstexViewer SPICE
L 168 - 284 Jmol AstexViewer SPICE
l 168 - 284 Jmol AstexViewer SPICE
M 168 - 284 Jmol AstexViewer SPICE
m 168 - 284 Jmol AstexViewer SPICE
N 168 - 284 Jmol AstexViewer SPICE
n 168 - 284 Jmol AstexViewer SPICE
O 168 - 284 Jmol AstexViewer SPICE
o 168 - 284 Jmol AstexViewer SPICE
P 168 - 284 Jmol AstexViewer SPICE
p 168 - 284 Jmol AstexViewer SPICE
q 168 - 284 Jmol AstexViewer SPICE
Q 168 - 284 Jmol AstexViewer SPICE
r 168 - 284 Jmol AstexViewer SPICE
R 168 - 284 Jmol AstexViewer SPICE
S 168 - 284 Jmol AstexViewer SPICE
s 168 - 284 Jmol AstexViewer SPICE
T 168 - 284 Jmol AstexViewer SPICE
t 168 - 284 Jmol AstexViewer SPICE
u 168 - 284 Jmol AstexViewer SPICE
U 168 - 284 Jmol AstexViewer SPICE
v 168 - 284 Jmol AstexViewer SPICE
V 168 - 284 Jmol AstexViewer SPICE
W 168 - 284 Jmol AstexViewer SPICE
w 168 - 284 Jmol AstexViewer SPICE
x 168 - 284 Jmol AstexViewer SPICE
X 168 - 284 Jmol AstexViewer SPICE
Y 168 - 284 Jmol AstexViewer SPICE
Z 168 - 284 Jmol AstexViewer SPICE
3V56 A 168 - 284 Jmol AstexViewer SPICE
B 168 - 284 Jmol AstexViewer SPICE
C 168 - 284 Jmol AstexViewer SPICE
D 168 - 284 Jmol AstexViewer SPICE
E 168 - 284 Jmol AstexViewer SPICE
F 168 - 284 Jmol AstexViewer SPICE

TreeFam

Below is a phylogenetic tree of animal genes, with ortholog and paralog assignments, from TreeFam.