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7  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: RPOA_THETH (Q9Z9H6)

Summary

This is the summary of UniProt entry RPOA_THETH (Q9Z9H6).

Description: DNA-directed RNA polymerase subunit alpha EC=2.7.7.6
Source organism: Thermus thermophilus (NCBI taxonomy ID 274)
Length: 315 amino acids

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Source Domain Start End
Pfam A RNA_pol_L 25 223
Pfam A RNA_pol_A_bac 52 180
disorder n/a 230 254
low_complexity n/a 230 261
Pfam A RNA_pol_A_CTD 241 308
low_complexity n/a 279 290

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Sequence annotations

This section shows a graphical representation of this sequence, with Pfam domains shown in the standard Pfam format. Under the Pfam domain image we show various tracks, illustrating features on this sequence that we found in other databases. You can choose which databases to include using the drop-down panel under the image. More...

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Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q9Z9H6. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MLDSKLKAPV FTVRTQGREY GEFVLEPLER GFGVTLGNPL RRILLSSIPG
50
51
TAVTSVYIED VLHEFSTIPG VKEDVVEIIL NLKELVVRFL NPSLQTVTLL
100
101
LKAEGPKEVK ARDFLPVADV EIMNPDLHIA TLEEGGRLNM EVRVDRGVGY
150
151
VPAEKHGIKD RINAIPVDAV FSPVRRVAFQ VEDTRLGQRT DLDKLTLRIW
200
201
TDGSVTPLEA LNQAVEILRE HLTYFSNPQA AAVAAPEEAK EPEAPPEQEE
250
251
ELDLPLEELG LSTRVLHSLK EEGIESVRAL LALNLKDLKN IPGIGERSLE
300
301
EIKEALEKKG FTLKE                                      
315
 

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Checksums:
CRC64:F79D93B57526A1CB
MD5:e566af7c9ee3531d6c7941da7ff79a76

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
RNA_pol_A_bac 52 - 180 1IW7 A 52 - 180 Jmol AstexViewer SPICE
B 52 - 180 Jmol AstexViewer SPICE
K 52 - 180 Jmol AstexViewer SPICE
L 52 - 180 Jmol AstexViewer SPICE
1SMY A 52 - 180 Jmol AstexViewer SPICE
B 52 - 180 Jmol AstexViewer SPICE
K 52 - 180 Jmol AstexViewer SPICE
L 52 - 180 Jmol AstexViewer SPICE
2A68 A 52 - 180 Jmol AstexViewer SPICE
B 52 - 180 Jmol AstexViewer SPICE
K 52 - 180 Jmol AstexViewer SPICE
L 52 - 180 Jmol AstexViewer SPICE
2A69 A 52 - 180 Jmol AstexViewer SPICE
B 52 - 180 Jmol AstexViewer SPICE
K 52 - 180 Jmol AstexViewer SPICE
L 52 - 180 Jmol AstexViewer SPICE
2PPB A 52 - 180 Jmol AstexViewer SPICE
B 52 - 180 Jmol AstexViewer SPICE
K 52 - 180 Jmol AstexViewer SPICE
L 52 - 180 Jmol AstexViewer SPICE
3EQL A 52 - 180 Jmol AstexViewer SPICE
B 52 - 180 Jmol AstexViewer SPICE
K 52 - 180 Jmol AstexViewer SPICE
L 52 - 180 Jmol AstexViewer SPICE
RNA_pol_A_CTD 247 - 308 1DOQ A 247 - 308 Jmol AstexViewer SPICE
RNA_pol_L 25 - 223 1IW7 A 25 - 223 Jmol AstexViewer SPICE
B 25 - 223 Jmol AstexViewer SPICE
K 25 - 223 Jmol AstexViewer SPICE
L 25 - 223 Jmol AstexViewer SPICE
1SMY A 25 - 223 Jmol AstexViewer SPICE
B 25 - 223 Jmol AstexViewer SPICE
K 25 - 223 Jmol AstexViewer SPICE
L 25 - 223 Jmol AstexViewer SPICE
2A68 A 25 - 223 Jmol AstexViewer SPICE
B 25 - 223 Jmol AstexViewer SPICE
K 25 - 223 Jmol AstexViewer SPICE
L 25 - 223 Jmol AstexViewer SPICE
2A69 A 25 - 223 Jmol AstexViewer SPICE
B 25 - 223 Jmol AstexViewer SPICE
K 25 - 223 Jmol AstexViewer SPICE
L 25 - 223 Jmol AstexViewer SPICE
2PPB A 25 - 223 Jmol AstexViewer SPICE
B 25 - 223 Jmol AstexViewer SPICE
K 25 - 223 Jmol AstexViewer SPICE
L 25 - 223 Jmol AstexViewer SPICE
3EQL A 25 - 223 Jmol AstexViewer SPICE
B 25 - 223 Jmol AstexViewer SPICE
K 25 - 223 Jmol AstexViewer SPICE
L 25 - 223 Jmol AstexViewer SPICE