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Structure: 2QBH

Summary

2qbh
PDB entry 2qbh: Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). This file contains the 30S subunit of the first 70S ribosome, with gentamicin bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.
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PDB entry 2qbh

Crystal structure of the bacterial ribosome from escherichia coli in complex with gentamicin and ribosome recycling factor (rrf). this file contains the 30s subunit of the first 70s ribosome, with gentamicin bound. the entire crystal structure contains two 70s ribosomes and is described in remark 400.

Experiment type: Other, resolution 4.00Å
Release date: 2007-09-25
Authors: Borovinskaya, M.A., Pai, R.D., Zhang, W., Schuwirth, B.-S., Holton, J.M., Hirokawa, G., Kaji, H., Kaji, A., Cate, J.H.D.
Species: Escherichia coli (strain K12

PDBprint

Below is the PDBprint for entry 2qbh.

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Literature

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Domain organisation

Many structures in the PDB are linked to one or more UniProt protein sequence entries. This section shows the Pfam domains which are found on the UniProt sequence(s) referred to by this structure.

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Sequence mapping

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from PDBe, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the sequences and Pfam domains that correspond to this structure.

PDB UniProt Pfam family
Chain Start End ID Start End
B 8 224 RS2_ECOLI 9 225 Ribosomal_S2 (PF00318)
C 37 110 RS3_ECOLI 38 111 KH_2 (PF07650)
C 118 201 RS3_ECOLI 119 202 Ribosomal_S3_C (PF00189)
D 95 142 RS4_ECOLI 96 143 S4 (PF01479)
D 1 94 RS4_ECOLI 2 95 Ribosomal_S4 (PF00163)
E 84 157 RS5_ECOLI 85 158 Ribosomal_S5_C (PF03719)
E 9 75 RS5_ECOLI 10 76 Ribosomal_S5 (PF00333)
F 2 92 RS6_ECOLI 2 92 Ribosomal_S6 (PF01250)
G 2 148 RS7_ECOLI 3 149 Ribosomal_S7 (PF00177)
H 4 129 RS8_ECOLI 5 130 Ribosomal_S8 (PF00410)
I 9 129 RS9_ECOLI 10 130 Ribosomal_S9 (PF00380)
J 6 102 RS10_ECOLI 6 102 Ribosomal_S10 (PF00338)
K 18 127 RS11_ECOLI 19 128 Ribosomal_S11 (PF00411)
L 1 122 RS12_ECOLI 2 123 Ribosom_S12_S23 (PF00164)
M 2 107 RS13_ECOLI 3 108 Ribosomal_S13 (PF00416)
N 45 99 RS14_ECOLI 46 100 Ribosomal_S14 (PF00253)
O 6 88 RS15_ECOLI 6 88 Ribosomal_S15 (PF00312)
P 8 68 RS16_ECOLI 8 68 Ribosomal_S16 (PF00886)
Q 9 77 RS17_ECOLI 10 78 Ribosomal_S17 (PF00366)
R 19 67 RS18_ECOLI 20 68 Ribosomal_S18 (PF01084)
S 2 80 RS19_ECOLI 3 81 Ribosomal_S19 (PF00203)
T 2 84 RS20_ECOLI 3 85 Ribosomal_S20p (PF01649)
U 3 53 RS21_ECOLI 4 54 Ribosomal_S21 (PF01165)

Note: This mapping was provided by the PDBe group.

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