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1  structure 3  species 0  interactions 30  sequences 30  architectures

Structure: 2VHM

Summary

2vhm
PDB entry 2vhm: STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 1 OF 4)
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PDB entry 2vhm

Structure of pdf binding helix in complex with the ribosome (part 1 of 4)

Experiment type: Other, resolution 3.74Å
Release date: 2008-02-26
Authors: Bingel-Erlenmeyer, R., Kohler, R., Kramer, G., Sandikci, A., Antolic, S., Maier, T., Schaffitzel, C., Wiedmann, B., Bukau, B., Ban, N.
Species: Escherichia coli (strain K12, Escherichia coli (strain UTI89 / UPEC, Escherichia coli O6:K15:H31 (strain 536 / UPEC

PDBprint

Below is the PDBprint for entry 2vhm.

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Literature

BioLit references

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Domain organisation

Many structures in the PDB are linked to one or more UniProt protein sequence entries. This section shows the Pfam domains which are found on the UniProt sequence(s) referred to by this structure.

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Sequence mapping

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from PDBe, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the sequences and Pfam domains that correspond to this structure.

PDB UniProt Pfam family
Chain Start End ID Start End
n/a 1 56 RL32_ECOL5 2 57 Ribosomal_L32p (PF01783)
1 5 52 RL33_ECOLI 6 53 Ribosomal_L33 (PF00471)
2 1 44 RL34_ECOLI 1 44 Ribosomal_L34 (PF00468)
3 1 61 RL35_ECOLI 2 62 Ribosomal_L35p (PF01632)
4 1 38 RL36_ECOLI 1 38 Ribosomal_L36 (PF00444)
5 147 152 DEF_ECOLI 148 153 Pep_deformylase (PF01327)
C 123 250 RL2_ECOLI 124 251 Ribosomal_L2_C (PF03947)
C 41 117 RL2_ECOLI 42 118 Ribosomal_L2 (PF00181)
D 8 204 RL3_ECOLI 8 204 Ribosomal_L3 (PF00297)
E 12 199 RL4_ECOLI 12 199 Ribosomal_L4 (PF00573)
F 22 79 RL5_ECOLI 23 80 Ribosomal_L5 (PF00281)
F 83 177 RL5_ECOLI 84 178 Ribosomal_L5_C (PF00673)
G 10 81 RL6_ECOLI 11 82 Ribosomal_L6 (PF00347)
G 89 164 RL6_ECOLI 90 165 Ribosomal_L6 (PF00347)
H 62 149 RL9_ECOLI 62 149 Ribosomal_L9_C (PF03948)
H 1 48 RL9_ECOLI 1 48 Ribosomal_L9_N (PF01281)
I 7 66 RL11_ECOLI 8 67 Ribosomal_L11_N (PF03946)
I 71 139 RL11_ECOLI 72 140 Ribosomal_L11 (PF00298)
J 15 141 RL13_ECOUT 15 141 Ribosomal_L13 (PF00572)
K 2 123 RL14_ECOUT 2 123 Ribosomal_L14 (PF00238)
L 26 144 RL15_ECOLI 26 144 Ribosomal_L18e (PF00828)
M 4 132 RL16_ECOLI 4 132 Ribosomal_L16 (PF00252)
N 20 116 RL17_ECOL5 20 116 Ribosomal_L17 (PF01196)
O 1 117 RL18_ECOLI 1 117 Ribosomal_L18p (PF00861)
P 1 113 RL19_ECOLI 2 114 Ribosomal_L19 (PF01245)
Q 1 108 RL20_ECOLI 2 109 Ribosomal_L20 (PF00453)
R 1 96 RL21_ECOL5 1 96 Ribosomal_L21p (PF00829)
S 5 109 RL22_ECOLI 5 109 Ribosomal_L22 (PF00237)
T 8 99 RL23_ECOUT 8 99 Ribosomal_L23 (PF00276)
U 6 36 RL24_ECOLI 7 37 KOW (PF00467)
V 4 91 RL25_ECOLI 4 91 Ribosomal_L25p (PF01386)
W 1 82 RL27_ECOLI 2 83 Ribosomal_L27 (PF01016)
X 3 60 RL29_ECOLI 3 60 Ribosomal_L29 (PF00831)
Y 3 54 RL30_ECOL5 4 55 Ribosomal_L30 (PF00327)
Z 1 67 RL31_ECOLI 1 67 Ribosomal_L31 (PF01197)

Note: This mapping was provided by the PDBe group.

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